YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3256850, gi\|1...
Organism:	Pyrococcus horikoshii OT3
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3256850, gi|1....

Description	E-value	Query Range	Subject Range
gi\|20093930, gi\|... - gi\|20093930\|ref\|NP_613777.1\| fused ProFAR isomerase-like protein/uncharacterized protein [Methanopyr...	160.0	[0..2]	[109..234]
gi\|57160096, gi\|... - gi\|57641772\|ref\|YP_184250.1\| hypothetical protein TK1837 [Thermococcus kodakarensis KOD1], gi\|571600...	140.0	[0..2]	[110..1]
gi\|51975460, gi\|... - gi\|52141991\|ref\|YP_084839.1\| hypothetical protein BCZK3253 [Bacillus cereus E33L], gi\|51975460\|gb\|AA...	140.0	[0..4]	[109..2]
gi\|5459005, gi\|7... - pir\|\|E75006 hypothetical protein PAB1310 - Pyrococcus abyssi (strain Orsay), gi\|5459005\|emb\|CAB50491... gi\|14521785, gi\|... - gi\|5459005\|emb\|CAB50491.1\| Hypothetical protein [Pyrococcus abyssi GE5], gi\|14521785\|ref\|NP_127261.1...	140.0	[0..2]	[114..1]
gi\|58177464 - gi\|58177464\|pdb\|1XNE\|A Chain A, Solution Structure Of Pyrococcus Furiosus Protein Pf0470: The Northe... gi\|18892443, gi\|... - gi\|18976842\|ref\|NP_578199.1\| hypothetical protein PF0470 [Pyrococcus furiosus DSM 3638], gi\|18892443...	138.0	[0..2]	[114..1]
gi\|42782608, gi\|... - gi\|42782608\|ref\|NP_979855.1\| hypothetical protein BCE_3558 [Bacillus cereus ATCC 10987], gi\|42738534...	138.0	[0..4]	[109..2]
gi\|32189307, gi\|... - gi\|6017115\|gb\|AAF01598.1\|AC009895_19 unknown protein [Arabidopsis thaliana], gi\|32189307\|gb\|AAP75808...	136.0	[0..5]	[106..107]
gi\|74490225, gi\|... - gi\|75762286\|ref\|ZP_00742170.1\| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israel...	135.0	[0..4]	[109..5]

Back

Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKVYRLYLR DEYLEMVKSG KKRIEVRVAY PQLKGMKRGD KIIFNDEVPA EVIEVKHYET  60
   61 FRQVLREEPI DKIFPDEPSF ERALRRFHNL YPKWKENRYG VIAIKFKLLG RERK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	1xneA
Description:	Solution Structure of Pyrococcus furiosus Protein PF0470: The Northeast Structural Genomics Consortium Target PfR14
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits