YRC Public Data Repository - Protein Structure Prediction

Protein:	RS16_RHILO
Organism:	Mesorhizobium loti MAFF303099
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS16_RHILO.

Description	E-value	Query Range	Subject Range
RS16_LEUMM - 30S ribosomal protein S16 OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO...	150.0	[0..1]	[133..1]
RS16_BARQU - 30S ribosomal protein S16 OS=Bartonella quintana GN=rpsP PE=3 SV=1 RS16_BARQU - 30S ribosomal protein S16 OS=Bartonella quintana (strain Toulouse) GN=rpsP PE=3 SV=1	150.0	[0..1]	[117..1]
RS16_BARHE - 30S ribosomal protein S16 OS=Bartonella henselae GN=rpsP PE=3 SV=1 RS16_BARHE - 30S ribosomal protein S16 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpsP...	150.0	[0..1]	[126..1]
RS16_BARBK - 30S ribosomal protein S16 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpsP PE=3 SV=1	146.0	[0..1]	[103..1]
gi\|109501187, gi... - ref\|XP_214132.1\| similar to mitochondrial ribosomal protein S16 [Rattus norvegicus], gi\|157817017\|re...	146.0	[0..3]	[120..17]
gi\|254689976 - gi\|254689976\|ref\|ZP_05153230.1\| 30S ribosomal protein S16 [Brucella abortus bv. 6 str. 870] gi\|254698128 - gi\|254698128\|ref\|ZP_05159956.1\| 30S ribosomal protein S16 [Brucella abortus bv. 2 str. 86/8/59] RS16_BRUA2 - 30S ribosomal protein S16 OS=Brucella abortus (strain 2308) GN=rpsP PE=3 SV=1 gi\|237816188, gi... - gi\|237816188\|ref\|ZP_04595183.1\| ribosomal protein S16 [Brucella abortus str. 2308 A], gi\|237788650\|g... RS16_BRUAB - 30S ribosomal protein S16 OS=Brucella abortus GN=rpsP PE=3 SV=1 RS16_BRUAB - 30S ribosomal protein S16 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpsP PE=3 SV=1 RS16_BRUA1 - 30S ribosomal protein S16 OS=Brucella abortus (strain S19) GN=rpsP PE=3 SV=1 gi\|254731012 - gi\|254731012\|ref\|ZP_05189590.1\| 30S ribosomal protein S16 [Brucella abortus bv. 4 str. 292]	146.0	[0..1]	[108..1]
gi\|114705072, gi... - gi\|114705072\|ref\|ZP_01437980.1\| 30s ribosomal protein s16 [Fulvimarina pelagi HTCC2506], gi\|11453985...	145.0	[0..1]	[109..1]
RS16_CHESB - 30S ribosomal protein S16 OS=Chelativorans sp. (strain BNC1) GN=rpsP PE=3 SV=1	144.0	[0..1]	[102..1]
RS16_BRUME - 30S ribosomal protein S16 OS=Brucella melitensis GN=rpsP PE=3 SV=1 gi\|254700466 - gi\|254700466\|ref\|ZP_05162294.1\| 30S ribosomal protein S16 [Brucella suis bv. 5 str. 513] RS16_BRUO2 - 30S ribosomal protein S16 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpsP PE=3 SV... RS16_BRUC2 - 30S ribosomal protein S16 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsP PE=3 SV=1 gi\|254703588 - gi\|254703588\|ref\|ZP_05165416.1\| 30S ribosomal protein S16 [Brucella suis bv. 3 str. 686] gi\|225628375, gi... - gi\|225628375\|ref\|ZP_03786409.1\| ribosomal protein S16 [Brucella ceti str. Cudo], gi\|225616221\|gb\|EEH... gi\|254694468 - gi\|254694468\|ref\|ZP_05156296.1\| 30S ribosomal protein S16 [Brucella abortus bv. 3 str. Tulya] gi\|254714663 - gi\|254714663\|ref\|ZP_05176474.1\| 30S ribosomal protein S16 [Brucella ceti M644/93/1] gi\|254717561 - gi\|254717561\|ref\|ZP_05179372.1\| 30S ribosomal protein S16 [Brucella ceti M13/05/1] gi\|254708325 - gi\|254708325\|ref\|ZP_05170153.1\| 30S ribosomal protein S16 [Brucella pinnipedialis M163/99/10] gi\|254708823 - gi\|254708823\|ref\|ZP_05170634.1\| 30S ribosomal protein S16 [Brucella pinnipedialis B2/94] RS16_BRUSU - 30S ribosomal protein S16 OS=Brucella suis biovar 1 (strain 1330) GN=rpsP PE=3 SV=1 RS16_BRUME - 30S ribosomal protein S16 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... gi\|254719811 - gi\|254719811\|ref\|ZP_05181622.1\| 30S ribosomal protein S16 [Brucella sp. 83/13] RS16_BRUSU - 30S ribosomal protein S16 OS=Brucella suis GN=rpsP PE=3 SV=1	144.0	[0..1]	[102..1]
ENSPTRT00000004940 - null MRPS16 - mitochondrial ribosomal protein S16	144.0	[0..3]	[123..17]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKIRLARA GSKKRPYYHV VVADARSPRD GRFIESLGSW NPLLPKDGER VKVDADRVKH  60
   61 WLSHGAQPTD RVLRFLDEAG LAKRDARSNP KKAEPGKKAQ ERAALLKKAQ EDAAAAVAAA 120
  121 AAAPAEAEAA TAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1pnsP
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits