YRC Public Data Repository - Protein Structure Prediction

Protein:	RL27_RHILO
Organism:	Mesorhizobium loti MAFF303099
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL27_RHILO.

Description	E-value	Query Range	Subject Range
RL27_XANP2 - 50S ribosomal protein L27 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpmA PE=3 SV...	153.0	[0..1]	[89..1]
gi\|114771044, gi... - gi\|114771044\|ref\|ZP_01448484.1\| 50S ribosomal protein L27 [alpha proteobacterium HTCC2255], gi\|11454... gi\|114771044 - gi\|114771044\|ref\|ZP_01448484.1\| 50S ribosomal protein L27 [alpha proteobacterium HTCC2255]	151.0	[0..1]	[89..1]
gi\|114706783, gi... - gi\|114706783\|ref\|ZP_01439683.1\| 50S ribosomal protein L27 [Fulvimarina pelagi HTCC2506], gi\|11453773...	150.0	[0..1]	[89..1]
RL27_CHESB - 50S ribosomal protein L27 OS=Chelativorans sp. (strain BNC1) GN=rpmA PE=3 SV=1	149.0	[0..1]	[89..1]
RL27_BARQU - 50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) GN=rpmA PE=3 SV=1 RL27_BARQU - 50S ribosomal protein L27 OS=Bartonella quintana GN=rpmA PE=3 SV=1	149.0	[0..1]	[89..1]
RL27_BRAJA - 50S ribosomal protein L27 OS=Bradyrhizobium japonicum GN=rpmA PE=3 SV=1 RL27_BRADU - 50S ribosomal protein L27 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479...	148.0	[0..1]	[89..1]
RL27_BARHE - 50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpmA... RL27_BARHE - 50S ribosomal protein L27 OS=Bartonella henselae GN=rpmA PE=3 SV=1	148.0	[0..1]	[89..1]
RL27_BRUAB - 50S ribosomal protein L27 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpmA PE=3 SV=1 gi\|254698153 - gi\|254698153\|ref\|ZP_05159981.1\| 50S ribosomal protein L27 [Brucella abortus bv. 2 str. 86/8/59] gi\|254700491 - gi\|254700491\|ref\|ZP_05162319.1\| 50S ribosomal protein L27 [Brucella suis bv. 5 str. 513] gi\|254690002 - gi\|254690002\|ref\|ZP_05153256.1\| 50S ribosomal protein L27 [Brucella abortus bv. 6 str. 870] gi\|254694493 - gi\|254694493\|ref\|ZP_05156321.1\| 50S ribosomal protein L27 [Brucella abortus bv. 3 str. Tulya] gi\|254731036 - gi\|254731036\|ref\|ZP_05189614.1\| 50S ribosomal protein L27 [Brucella abortus bv. 4 str. 292] gi\|254703614 - gi\|254703614\|ref\|ZP_05165442.1\| 50S ribosomal protein L27 [Brucella suis bv. 3 str. 686] RL27_BRUA2 - 50S ribosomal protein L27 OS=Brucella abortus (strain 2308) GN=rpmA PE=3 SV=1 gi\|254719835 - gi\|254719835\|ref\|ZP_05181646.1\| 50S ribosomal protein L27 [Brucella sp. 83/13] RL27_BRUO2 - 50S ribosomal protein L27 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpmA PE=3 SV... RL27_BRUSU - 50S ribosomal protein L27 OS=Brucella suis biovar 1 (strain 1330) GN=rpmA PE=3 SV=1 RL27_BRUSI - 50S ribosomal protein L27 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpmA PE=3 SV=1 RL27_BRUC2 - 50S ribosomal protein L27 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpmA PE=3 SV=1 RL27_BRUA1 - 50S ribosomal protein L27 OS=Brucella abortus (strain S19) GN=rpmA PE=3 SV=1 gi\|237816213, gi... - gi\|237816213\|ref\|ZP_04595208.1\| ribosomal protein L27 [Brucella abortus str. 2308 A], gi\|237788675\|g... RL27_BRUAB - 50S ribosomal protein L27 OS=Brucella abortus GN=rpmA PE=3 SV=1 gi\|239825202, gi... - gi\|239832935\|ref\|ZP_04681264.1\| ribosomal protein L27 [Ochrobactrum intermedium LMG 3301], gi\|239825... RL27_BRUSU - 50S ribosomal protein L27 OS=Brucella suis GN=rpmA PE=3 SV=1 RL27_BRUMB - 50S ribosomal protein L27 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpmA PE=3 SV=1	148.0	[0..1]	[89..1]
RL27_RHOP2 - 50S ribosomal protein L27 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpmA PE=3 SV=1	148.0	[0..1]	[89..1]
RK27_ARATH - 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 SV=1	147.0	[0..2]	[89..59]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKKAGGSS RNGRDSHSKR LGVKKFGGEA VIPGNIIIRQ RGTTWHPGVN VGMGTDHTLF  60
   61 ALESGAVTFN KKANGRTYVS VNPITKAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	1v8qA
Description:	Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits