YRC Public Data Repository - Protein Structure Prediction

Protein:	CH102_RHILO
Organism:	Mesorhizobium loti MAFF303099
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CH102_RHILO.

Description	E-value	Query Range	Subject Range
gi\|27353501, gi\|... - gi\|27380337\|ref\|NP_771866.1\| co-chaperonin GroES [Bradyrhizobium japonicum USDA 110], gi\|27353501\|db...	147.0	[0..1]	[104..3]
gi\|227818821, gi... - gi\|36959079\|gb\|AAQ87504.1\| 10 kDa chaperonin GroES [Rhizobium sp. NGR234], gi\|227818821\|ref\|YP_00282...	145.0	[0..1]	[104..1]
gi\|78695632, gi\|... - gi\|78695632\|ref\|ZP_00860143.1\| heat shock protein [Bradyrhizobium sp. BTAi1], gi\|78516195\|gb\|EAP2949...	145.0	[0..1]	[104..3]
CH11_BRAJA, CH10... - (P77828) 10 kDa chaperonin 1 (Protein Cpn10 1) (groES protein 1), 10 kDa chaperonin 1 OS=Bradyrhizob... CH101_BRADU - 10 kDa chaperonin 1 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / US...	145.0	[0..1]	[104..1]
gi\|113879392, gi... - gi\|150396500\|ref\|YP_001326967.1\| chaperonin Cpn10 [Sinorhizobium medicae WSM419], gi\|150028015\|gb\|AB...	143.0	[0..1]	[104..1]
gi\|86361059, gi\|... - gi\|86361059\|ref\|YP_472946.1\| 10 kDa chaperonin, heat shock protein [Rhizobium etli CFN 42], gi\|86285...	143.0	[0..1]	[104..1]
gi\|154248185, gi... - gi\|89358037\|ref\|ZP_01195859.1\| heat shock protein groES [Xanthobacter autotrophicus Py2], gi\|8935221...	143.0	[0..1]	[104..1]
CH10_ACICJ - 10 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groS PE=3 SV=1	142.0	[0..1]	[104..1]
gi\|69929072, gi\|... - gi\|92116747\|ref\|YP_576476.1\| co-chaperonin GroES [Nitrobacter hamburgensis X14], gi\|91799641\|gb\|ABE6...	142.0	[0..1]	[104..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFRPLHDRI LVRRIEAEEK TAGGIIIPDT AKEKPQEGEV IAIGPGARDE SGKLTPLDVK  60
   61 AGDRILFGKW SGTEIKLNGE DLLIMKESDV MGVIEQTATV KKAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1wnrA
Description:	Crystal structure of the Cpn10 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chaperone binding	3.52404463833595	bayes_pls_golite062009
unfolded protein binding	2.30823619318536	bayes_pls_golite062009
binding	2.29520443217747	bayes_pls_golite062009
protein binding	1.35579823286173	bayes_pls_golite062009
catalytic activity	0.217171374336363	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: