YRC Public Data Repository - Protein Structure Prediction

Protein:	Y2356_ARCFU
Organism:	Archaeoglobus fulgidus DSM 4304
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y2356_ARCFU.

Description	E-value	Query Range	Subject Range
gi\|126179424, gi... - gi\|126179424\|ref\|YP_001047389.1\| hypothetical protein Memar_1478 [Methanoculleus marisnigri JR1], gi...	190.0	[0..1]	[146..18]
Y875_PYRAB - UPF0310 protein PYRAB08750 OS=Pyrococcus abyssi GN=PYRAB08750 PE=3 SV=1 Y875_PYRAB - UPF0310 protein PYRAB08750 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB08750 PE=3 SV=1	190.0	[0..1]	[144..1]
gi\|88602789, gi\|... - gi\|88602789\|ref\|YP_502967.1\| hypothetical protein Mhun_1515 [Methanospirillum hungatei JF-1], gi\|881...	189.0	[0..1]	[143..1]
YD82_METJA, Y138... - (Q58777) Hypothetical UPF0310 protein MJ1382, UPF0310 protein MJ1382 OS=Methanocaldococcus jannaschi... Y1382_METJA - UPF0310 protein MJ1382 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM ...	184.0	[0..1]	[145..1]
Y3206_RHILO, YW0... - (Q98GR7) Hypothetical UPF0310 protein msl3206, UPF0310 protein msl3206 OS=Rhizobium loti GN=msl3206 ... Y3206_RHILO - UPF0310 protein msl3206 OS=Rhizobium loti (strain MAFF303099) GN=msl3206 PE=3 SV=2	184.0	[0..2]	[146..3]
Y1033_PYRHO, YA3... - (O58764) Hypothetical UPF0310 protein PH1033, UPF0310 protein PH1033 OS=Pyrococcus horikoshii GN=PH1... Y1033_PYRHO - UPF0310 protein PH1033 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 10...	181.0	[0..1]	[144..1]
Y3536_METJA - UPF0310 protein MJECL36 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM... YZ36_METJA, Y353... - (Q60257) Hypothetical UPF0310 protein MJECL36, UPF0310 protein MJECL36 OS=Methanocaldococcus jannasc...	181.0	[0..1]	[142..1]
gi\|119692210, gi... - gi\|92915059\|ref\|ZP_01283684.1\| Protein of unknown function DUF55 [Mycobacterium sp. KMS], gi\|9244085... gi\|92433788, gi\|... - gi\|92909326\|ref\|ZP_01278104.1\| Protein of unknown function DUF55 [Mycobacterium sp. JLS], gi\|9243378... gi\|108797036, gi... - gi\|108797036\|ref\|YP_637233.1\| hypothetical protein Mmcs_0055 [Mycobacterium sp. MCS], gi\|108767455\|g...	180.0	[0..1]	[147..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYWLCITNE DNWRVIKEKN IWGVPERHKN TIAKVKKGDK LLIYIKQENV NGEVKPSRIV  60
   61 AVYETASEVY RDSSRIFKSP KGMGNETFPL RIKLKPVKIF DRPIEFKPLI PKLKFITNKR 120
  121 KWSGHLMGKA MREIPEEDYR LILEYAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	2p5dA
Description:	No description for 2p5dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits