YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUS6_NEUCR, NUM...
Organism:	Neurospora crassa
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUS6_NEUCR, NUM....

Description	E-value	Query Range	Subject Range
NUMM_NEUCR - (Q03015) NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6...	188.0	[0..1]	[104..1]
gi\|90306462, gi\|... - gi\|90306462\|gb\|EAS36093.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119194145\|re...	187.0	[0..1]	[104..1]
gi\|40742951, gi\|... - gi\|67901148\|ref\|XP_680830.1\| hypothetical protein AN7561.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	186.0	[0..1]	[101..1]
gi\|66853461, gi\|... - gi\|71002284\|ref\|XP_755823.1\| NADH-ubiquinone oxidoreductase 12 kda subunit [Aspergillus fumigatus Af... gi\|119409107, gi... - gi\|119481849\|ref\|XP_001260953.1\| NADH-ubiquinone oxidoreductase 12 kda subunit, putative [Neosartory... gi\|159129880 - gi\|159129880\|gb\|EDP54994.1\| NADH-ubiquinone oxidoreductase 12 kda subunit, putative [Aspergillus fum...	185.0	[0..1]	[104..1]
gi\|114190392, gi... - gi\|115401726\|ref\|XP_001216451.1\| NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial precur...	182.0	[0..1]	[101..1]
gi\|39950993, gi\|... - gi\|39950993\|ref\|XP_363341.1\| hypothetical protein MGG_01267 [Magnaporthe grisea 70-15], gb\|EAA55616....	181.0	[0..1]	[103..1]
gi\|169763048 - gi\|169763048\|ref\|XP_001727424.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238488897, gi... - gi\|238488897\|ref\|XP_002375686.1\| NADH-ubiquinone oxidoreductase 12 kda subunit, putative [Aspergillu... gi\|83770452 - gi\|83770452\|dbj\|BAE60585.1\| unnamed protein product [Aspergillus oryzae]	180.0	[0..1]	[100..1]
gi\|68137987 - gi\|68137987\|gb\|AAY85810.1\| mitochondrial NADH-ubiquinone oxidoreductase 12 kDa subunit precursor [Ch...	180.0	[0..1]	[104..1]
gi\|169602757, gi... - gi\|169602757\|ref\|XP_001794800.1\| hypothetical protein SNOG_04381 [Phaeosphaeria nodorum SN15], gi\|11...	177.0	[0..1]	[104..1]
gi\|46108232, gi\|... - gi\|46108232\|ref\|XP_381174.1\| hypothetical protein FG00998.1 [Gibberella zeae PH-1], gi\|42544453\|gb\|E...	174.0	[0..1]	[102..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTPESAAFL AKKPTVPPTF DGVDYNDTKR LKQAQDAIIR EQWVRVMMGR LVREELSKCY  60
   61 YREGVNHLEK CGHLRERYLQ LLSENRVQGY LFEQQNHFAN QPKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.775	a.247.1	Description not found.
View	Download	0.646	a.219.1	Description not found.
View	Download	0.585	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.566	a.118.9	ENTH/VHS domain
View	Download	0.512	a.29.12	Description not found.
View	Download	0.469	a.7.1	Spectrin repeat
View	Download	0.462	a.151.1	Glutamyl tRNA-reductase dimerization domain
View	Download	0.445	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.432	a.1.1	Globin-like
View	Download	0.429	f.17.1	F1F0 ATP synthase subunit C

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits