YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPA_RICTY
Organism:	Rickettsia typhi str. Wilmington
Length:	512 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPA_RICTY.

Description	E-value	Query Range	Subject Range
gi\|237788629, gi... - gi\|237816167\|ref\|ZP_04595162.1\| ATP synthase F1, alpha subunit [Brucella abortus str. 2308 A], gi\|23... ATPA_BRUAB - ATP synthase subunit alpha OS=Brucella abortus biovar 1 (strain 9-941) GN=atpA PE=3 SV=1 ATPA_BRUA2 - ATP synthase subunit alpha OS=Brucella abortus (strain 2308) GN=atpA PE=3 SV=1 gi\|254730989 - gi\|254730989\|ref\|ZP_05189567.1\| F0F1 ATP synthase subunit alpha [Brucella abortus bv. 4 str. 292] ATPA_BRUAB - ATP synthase subunit alpha OS=Brucella abortus GN=atpA PE=3 SV=1 gi\|254689954 - gi\|254689954\|ref\|ZP_05153208.1\| F0F1 ATP synthase subunit alpha [Brucella abortus bv. 6 str. 870] gi\|254698105 - gi\|254698105\|ref\|ZP_05159933.1\| F0F1 ATP synthase subunit alpha [Brucella abortus bv. 2 str. 86/8/59... ATPA_BRUA1 - ATP synthase subunit alpha OS=Brucella abortus (strain S19) GN=atpA PE=3 SV=1	627.0	[0..1]	[508..1]
gi\|94495686, gi\|... - gi\|94495686\|ref\|ZP_01302266.1\| ATP synthase alpha subunit [Sphingomonas sp. SKA58], gi\|94425074\|gb\|E...	626.0	[0..1]	[508..1]
ATPA_BRUMB - ATP synthase subunit alpha OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpA PE=3 SV=1 ATPA_BRUME - ATP synthase subunit alpha OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) G... ATPA_BRUME - ATP synthase subunit alpha OS=Brucella melitensis GN=atpA PE=3 SV=1	626.0	[0..1]	[508..1]
ATPA_RHIME - ATP synthase subunit alpha OS=Rhizobium meliloti GN=atpA PE=3 SV=1 ATPA_RHIME - ATP synthase subunit alpha OS=Rhizobium meliloti (strain 1021) GN=atpA PE=3 SV=1	625.0	[0..1]	[508..1]
gi\|83944758, gi\|... - gi\|83944758\|ref\|ZP_00957124.1\| ATP synthase subunit A [Oceanicaulis alexandrii HTCC2633], gi\|8385154...	625.0	[0..1]	[508..1]
ATPA_BRUSU - ATP synthase subunit alpha OS=Brucella suis biovar 1 (strain 1330) GN=atpA PE=3 SV=1 ATPA_BRUSU - ATP synthase subunit alpha OS=Brucella suis GN=atpA PE=3 SV=1	624.0	[0..1]	[508..1]
ATPA_MARMM - ATP synthase subunit alpha OS=Maricaulis maris (strain MCS10) GN=atpA PE=3 SV=1	624.0	[0..1]	[508..1]
ATPA_SINMW - ATP synthase subunit alpha OS=Sinorhizobium medicae (strain WSM419) GN=atpA PE=3 SV=1	622.0	[0..1]	[508..1]
ATPA_BRASB - ATP synthase subunit alpha OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpA PE=3 SV=1	621.0	[0..1]	[508..1]
gi\|25290457, gi\|... - pir\|\|AG2898 ATP synthase alpha chain atpA [imported] - Agrobacterium tumefaciens (strain C58, Dupont... ATPA_AGRFC - ATP synthase subunit alpha OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=atpA PE=3 SV=1	620.0	[0..1]	[508..1]

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Predicted Domain #1

Region A:
Residues: [1-512]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKPIEVAE ILQKEIANIN CLSELEEVGQ VISVGDGIAK IYGLANVKSG EVVEFKSGVK  60
   61 GLILNLEHDS VGAVIMGDYS KVKQGDNVKR TKDVLKVLVG KALLGRTVDA LGNPIDGKGD 120
  121 IVSKEYRHIE MKAPGIIERT SVSEPVQTGI KAIDSLIPIG RGQRELIIGD RQTGKTAIAI 180
  181 DTIINQKQAH SLTNESDKIY CIYVAIGQKR SSVAQIVKKL EDAGAMDYTI VVLATASEAA 240
  241 SLQFIAPYSA CSMGEYFRDN GMHALIIYDD LSKHAVAYRQ ISLLLRRPPG REAYPGDVFY 300
  301 LHSRLLERAA KMSEEKGGGS LTALPIIETQ AGDVSAYIPT NVISITDGQI FLESDLFYKG 360
  361 IRPAVNVGIS VSRVGSAAQI KAMKQVAASV KLELAQFRER ESFSQFGSDL DSATKAQIEH 420
  421 GKRLVEILKQ EQYQPCPVEE QIVSIYVGTK KYLNDIPLQK VKEFEKAMLA EIRLNRKDIL 480
  481 ESIKTEQCIT EEIEQQLKAF LENFVQAYCV VP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	174.0
Match:	2v7qA
Description:	No description for 2v7qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits