YRC Public Data Repository - Protein Structure Prediction

Protein:	lcl\|NC_016856.1_...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lcl|NC_016856.1_....

Description	E-value	Query Range	Subject Range
gi\|83720943, gi\|... - gi\|83720943\|ref\|YP_443562.1\| ribosomal protein L14 [Burkholderia thailandensis E264], gi\|83654768\|gb...	3.0E-50	[1..123]	[61..182]
gi\|105894482, gi... - gi\|107024293\|ref\|YP_622620.1\| ribosomal protein L14 [Burkholderia cenocepacia AU 1054], gi\|105894482...	7.0E-50	[1..123]	[58..179]
gi\|229524567, gi... - gi\|229524567\|ref\|ZP_04413972.1\| LSU ribosomal protein L14p (L23e) [Vibrio cholerae bv. albensis VL42... gi\|229606868, gi... - gi\|229606868\|ref\|YP_002877516.1\| LSU ribosomal protein L14p (L23e) [Vibrio cholerae MJ-1236], gi\|229... gi\|254851126, gi... - gi\|254851126\|ref\|ZP_05240476.1\| 50S ribosomal protein L14 [Vibrio cholerae MO10], gi\|254846831\|gb\|EE... RL14_VIBC3 - 50S ribosomal protein L14 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... RL14_VIBCH - 50S ribosomal protein L14 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... RL14_VIBCH - 50S ribosomal protein L14 OS=Vibrio cholerae GN=rplN PE=3 SV=1 RL14_VIBCM - 50S ribosomal protein L14 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplN PE=3 SV=1 gi\|229507362, gi... - gi\|229507362\|ref\|ZP_04396867.1\| LSU ribosomal protein L14p (L23e) [Vibrio cholerae BX 330286], gi\|22... gi\|229509715, gi... - gi\|229509715\|ref\|ZP_04399196.1\| LSU ribosomal protein L14p (L23e) [Vibrio cholerae B33], gi\|22935318... gi\|124113500, gi... - gi\|153217558\|ref\|ZP_01951239.1\| ribosomal protein L14 [Vibrio cholerae 1587], gi\|124113500\|gb\|EAY323... gi\|229513509, gi... - gi\|229513509\|ref\|ZP_04402973.1\| LSU ribosomal protein L14p (L23e) [Vibrio cholerae TMA 21], gi\|22934... gi\|229516839, gi... - gi\|229516839\|ref\|ZP_04406285.1\| LSU ribosomal protein L14p (L23e) [Vibrio cholerae RC9], gi\|22934590... gi\|229521652, gi... - gi\|229521652\|ref\|ZP_04411070.1\| LSU ribosomal protein L14p (L23e) [Vibrio cholerae TM 11079-80], gi\|...	7.0E-50	[1..123]	[1..123]
RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplN PE=3 SV=1 RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum GN=rplN PE=3 SV=1	9.0E-50	[1..123]	[1..122]
gi\|75853466, gi\|... - gi\|75853466\|ref\|ZP_00761316.1\| COG0093: Ribosomal protein L14 [Vibrio sp. Ex25], gi\|116183087\|ref\|ZP... RL14_VIBCB - 50S ribosomal protein L14 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rplN PE=3 SV=1 gi\|254509440, gi... - gi\|254509440\|ref\|ZP_05121519.1\| ribosomal protein L14 [Vibrio parahaemolyticus 16], gi\|225098223\|ref... gi\|91228958, gi\|... - gi\|91228958\|ref\|ZP_01262853.1\| 50S ribosomal protein L14 [Vibrio alginolyticus 12G01], gi\|91187478\|g...	1.0E-49	[1..123]	[1..123]
RL14_VIBVU - 50S ribosomal protein L14 OS=Vibrio vulnificus (strain CMCP6) GN=rplN PE=3 SV=1 RL14_VIBVY - 50S ribosomal protein L14 OS=Vibrio vulnificus (strain YJ016) GN=rplN PE=3 SV=1 RL14_VIBVU - 50S ribosomal protein L14 OS=Vibrio vulnificus GN=rplN PE=3 SV=1	1.0E-49	[1..123]	[1..123]
gi\|84394580, gi\|... - gi\|84394580\|ref\|ZP_00993284.1\| 50S ribosomal protein L14 [Vibrio splendidus 12B01], gi\|84374800\|gb\|E...	2.0E-49	[1..123]	[1..123]
gi\|76809421, gi\|... - gi\|76809421\|ref\|YP_335130.1\| 50S ribosomal protein L14 [Burkholderia pseudomallei 1710b], gi\|7657887...	2.0E-49	[1..123]	[41..162]
gi\|90437103, gi\|... - gi\|90581688\|ref\|ZP_01237476.1\| 50S ribosomal protein L14 [Vibrio angustum S14], gi\|90437103\|gb\|EAS62...	2.0E-49	[1..123]	[1..123]
RL14_VIBPA - 50S ribosomal protein L14 OS=Vibrio parahaemolyticus GN=rplN PE=3 SV=1 RL14_VIBPA - 50S ribosomal protein L14 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rplN PE...	2.0E-49	[1..123]	[1..123]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQEQTMLNV ADNSGARRVM CIKVLGGSHR RYAGVGDIIK ITIKEAIPRG KVKKGDVLKA  60
   61 VVVRTKKGVR RPDGSVIRFD GNACVILNNN SEQPIGTRIF GPVTRELRNE KFMKIISLAP 120
  121 EVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1p85I
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0077098174023	bayes_pls_golite062009
structural molecule activity	9.43117206427219	bayes_pls_golite062009
binding	1.19249144486008	bayes_pls_golite062009
protein binding	0.555364167462951	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: