YRC Public Data Repository - Protein Structure Prediction

Protein:	lcl\|NC_016856.1_...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lcl|NC_016856.1_....

Description	E-value	Query Range	Subject Range
GCSH_SHEAM - Glycine cleavage system H protein OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvH PE...	192.0	[0..1]	[129..1]
GCSH_SYMTH - Glycine cleavage system H protein OS=Symbiobacterium thermophilum GN=gcvH PE=3 SV=1 GCSH_SYMTH - Glycine cleavage system H protein OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=gcvH PE=...	190.0	[0..1]	[128..1]
GCSH_SHELP - Glycine cleavage system H protein OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gcvH PE=3 S...	189.0	[0..1]	[129..1]
GCSH_ALTMD - Glycine cleavage system H protein OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 2... GCSH_ALTMD - Glycine cleavage system H protein OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gcvH...	187.0	[0..1]	[129..1]
GCSH_CHRVO - Glycine cleavage system H protein OS=Chromobacterium violaceum GN=gcvH PE=3 SV=1 GCSH_CHRVO - Glycine cleavage system H protein OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM ...	187.0	[0..1]	[126..1]
gi\|68229731, gi\|... - gi\|68229731\|ref\|ZP_00568923.1\| Glycine cleavage H-protein [Frankia sp. EAN1pec], gi\|68202722\|gb\|EAN1...	186.0	[0..5]	[129..70]
GCSH_SHESA - Glycine cleavage system H protein OS=Shewanella sp. (strain ANA-3) GN=gcvH PE=3 SV=1 SO0780 - glycine cleavage system H protein GCSH_SHESM - Glycine cleavage system H protein OS=Shewanella sp. (strain MR-4) GN=gcvH PE=3 SV=1 GCSH_SHEON - Glycine cleavage system H protein OS=Shewanella oneidensis (strain MR-1) GN=gcvH PE=3 SV=1	186.0	[0..1]	[129..1]
GCSH_HALHL - Glycine cleavage system H protein OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gcvH PE=3 SV...	186.0	[0..1]	[129..1]
gi\|91212282, gi\|... - gi\|91212282\|ref\|YP_542268.1\| glycine cleavage system protein H [Escherichia coli UTI89], gi\|91073856... gi\|26109727, gi\|... - gi\|26249319\|ref\|NP_755359.1\| glycine cleavage system protein H [Escherichia coli CFT073], gi\|2610972...	186.0	[0..1]	[129..2]
GCSH_ECOL6 - Glycine cleavage system H protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=... GCSH_ECOL6 - Glycine cleavage system H protein OS=Escherichia coli O6 GN=gcvH PE=3 SV=3 GCSH_ECOK1 - Glycine cleavage system H protein OS=Escherichia coli O1:K1 / APEC GN=gcvH PE=3 SV=1 GCSH_ECO81 - Glycine cleavage system H protein OS=Escherichia coli O81 (strain ED1a) GN=gcvH PE=3 SV=1 GCSH_ECO45 - Glycine cleavage system H protein OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=gcvH PE=3 SV=1 gi\|227888453, gi... - gi\|227888453\|ref\|ZP_04006258.1\| glycine cleavage system protein H [Escherichia coli 83972], gi\|22783... gi\|237706452, gi... - gi\|237706452\|ref\|ZP_04536933.1\| glycine cleavage system protein H [Escherichia sp. 3_2_53FAA], gi\|22...	186.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVPAELKY SKEHEWLRKE ADGTYTVGIT EHAQELLGDM VFVDLPEVGA TVSAGDDCAV  60
   61 AESVKAASDI YAPVSGEIVA VNDALSDSPE LVNSEPYTGG WIFKIKASDE SELESLLDAT 120
  121 AYEALLEDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1dxmA
Description:	Protein H of glycine cleavage system
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits