YRC Public Data Repository - Protein Structure Prediction

Protein:	lcl\|NC_016856.1_...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lcl|NC_016856.1_....

Description	E-value	Query Range	Subject Range
gi\|62129074, gi\|... - gi\|62181441\|ref\|YP_217858.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov...	284.0	[0..1]	[216..1]
gi\|75235644, gi\|... - gi\|75235644\|ref\|ZP_00719818.1\| hypothetical protein EcolE1_01002628 [Escherichia coli E110019], gi\|1...	275.0	[0..1]	[216..1]
gi\|187733988, gi... - gi\|75176379\|ref\|ZP_00696523.1\| hypothetical protein SboyB_01003608 [Shigella boydii BS512], gi\|18773...	275.0	[0..1]	[216..1]
gi\|75256963, gi\|... - gi\|75256963\|ref\|ZP_00728539.1\| hypothetical protein EcolE2_01003212 [Escherichia coli E22], gi\|19306... gi\|191166800, gi... - gi\|75230033\|ref\|ZP_00716543.1\| hypothetical protein EcolB7_01001721 [Escherichia coli B7A], gi\|19116...	275.0	[0..1]	[216..1]
gi\|82545171, gi\|... - gi\|82545171\|ref\|YP_409118.1\| hypothetical protein SBO_2764 [Shigella boydii Sb227], gi\|81246582\|gb\|A...	274.0	[0..1]	[216..1]
gi\|195939469 - gi\|195939469\|ref\|ZP_03084851.1\| hypothetical protein EscherichcoliO157_24163 [Escherichia coli O157:... gi\|208806548, gi... - gi\|208806548\|ref\|ZP_03248885.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str... gi\|208812308, gi... - gi\|208812308\|ref\|ZP_03253637.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str... gi\|208820668, gi... - gi\|208820668\|ref\|ZP_03260988.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str... gi\|25391291, gi\|... - pir\|\|C85925 hypothetical protein Z4065 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|187769614, gi... - gi\|187769614\|gb\|EDU33458.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|189003332, gi... - gi\|189003332\|gb\|EDU72318.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|12517213, gi\|... - gi\|15803273\|ref\|NP_289305.1\| hypothetical protein Z4065 [Escherichia coli O157:H7 EDL933], gi\|125172... gi\|189372160, gi... - gi\|189372160\|gb\|EDU90576.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|13363081, gi\|... - gi\|15832864\|ref\|NP_311637.1\| hypothetical protein ECs3610 [Escherichia coli O157:H7], gi\|13363081\|db... gi\|189377513, gi... - gi\|189377513\|gb\|EDU95929.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|188015784, gi... - gi\|188015784\|gb\|EDU53906.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|189357354, gi... - gi\|189357354\|gb\|EDU75773.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|168762842, gi... - gi\|189366898\|gb\|EDU85314.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|189362000, gi... - gi\|189362000\|gb\|EDU80419.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|209399506, gi... - gi\|209399506\|ref\|YP_002272220.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 st... gi\|254594096, gi... - gi\|254794696\|ref\|YP_003079533.1\| hypothetical protein ECSP_3704 [Escherichia coli O157:H7 str. TW143... gi\|217319439, gi... - gi\|217327072\|ref\|ZP_03443155.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str... gi\|13363081, gi\|... - gi\|15832864\|ref\|NP_311637.1\| hypothetical protein ECs3610 [Escherichia coli O157:H7 str. Sakai], gi\|...	273.0	[0..1]	[215..1]
gi\|157077604, gi... - gi\|75187484\|ref\|ZP_00700751.1\| hypothetical protein EcolE_01000715 [Escherichia coli E24377A], gi\|15...	272.0	[0..1]	[216..1]
gi\|90438177, gi\|... - gi\|90580720\|ref\|ZP_01236524.1\| hypothetical protein VAS14_16322 [Vibrio angustum S14], gi\|90438177\|g...	236.0	[0..1]	[211..1]
gi\|91772627, gi\|... - gi\|91772627\|ref\|YP_565319.1\| CRISPR-associated Cse3 family protein [Methanococcoides burtonii DSM 62...	233.0	[0..3]	[214..1]
gi\|196111468, gi... - gi\|88793936\|ref\|ZP_01109648.1\| hypothetical protein MADE_03906 [Alteromonas macleodii 'Deep ecotype'...	231.0	[0..1]	[213..1]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLSRITLHT SELSPAQLLH LVERGEYVMH QWLWDLFPGS KERQFLYRRE ELQGAFRFFV  60
   61 LSQEQPAASA IFDVQTRPFA PTLSAGQTLR FNLRANPTVC KNGKRHDLLM EAKRQRKTQG 120
  121 DSQDIWSYQQ QAALTWLARQ GEQNGFTLRE ASVDAYRQQQ IRRGKDRQMI QFSSVDYTGV 180
  181 LVINEPALFL QRLAQGFGKS RAFGCGMMMI KPGDDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.045757
Match:	1wj9A
Description:	Crystal structure of a CRISPR-associated protein from thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits