| Protein: | lcl|NC_016856.1_... |
| Organism: | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S |
| Length: | 487 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lcl|NC_016856.1_....
| Description | E-value | Query Range |
Subject Range |
|
|
8.0E-50 | [48..486] | [480..937] |
|
|
2.0E-49 | [187..479] | [1041..1334] |
|
|
2.0E-48 | [114..485] | [64..453] |
|
|
2.0E-48 | [114..485] | [201..590] |
|
|
6.0E-48 | [114..485] | [64..453] |
|
|
7.0E-48 | [76..485] | [14..443] |
|
|
8.0E-48 | [161..486] | [90..433] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MFRQLKKNLV ATLIAALALG QVAPAFADPA DTLPDMGTSA GSTLSIGQEM QMGDFYVRQL 60
61 RGSAPLINDP LLVQYINALG MRLVSHADSV KTPFHFFLIN NDE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [104-487] |
1 11 21 31 41 51
| | | | | |
1 INAFAFFGGN VVLHSALFRY ADNESQLASV MAHEISHVTQ RHLARAMEDQ KRSAPLTWVG 60
61 ALGSILLAMA SPQAGMAALT GTLAGTRQGM ISFTQQNEQE ADRIGIQVLQ RAGFDPQAMP 120
121 SFLEKLLDQA RYSTRPPEIL LTHPLPESRL ADARNRANQM RPVVVQSSAD FYFAKARALG 180
181 MYNSGRNQLT SDLLDQWSKG NVRQQHAAQY GRALQAMEAS KYDEARKTLQ PLLSAEPNNA 240
241 WYLDLATDID LGQKRANDAI NRLKNARDLR VNPVLQLNLA NAYLQGGQPK AAETILNRYT 300
301 FSHKDDGNGW DLLAQAEAAL NNRDQELAAR AESYALAGRL DQAISLLSSA SAQAKLGSQQ 360
361 QARYDARIDQ LRQLQERFKP YTKM
|
| Detection Method: | |
| Confidence: | 35.69897 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.38600536767442 | bayes_pls_golite062009 |
| protein binding | 0.883964976625377 | bayes_pls_golite062009 |
| hydrolase activity | 0.391317518372402 | bayes_pls_golite062009 |
