YRC Public Data Repository - Protein Structure Prediction

Protein:	lcl\|NC_016856.1_...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lcl|NC_016856.1_....

Description	E-value	Query Range	Subject Range
gi\|166859956, gi... - gi\|21552995\|gb\|AAM62419.1\|AF515666_5 CsmF [Pseudomonas putida GB-1], gi\|167033468\|ref\|YP_001668699.1...	4.0E-41	[2..131]	[7..135]
gi\|113969213, gi... - gi\|82495031\|ref\|ZP_00880609.1\| curli production assembly/transport component CsgF, putative [Shewane...	5.0E-39	[1..133]	[1..129]
gi\|78688742, gi\|... - gi\|78688742\|ref\|ZP_00853409.1\| curli production assembly/transport component CsgF, putative [Shewane... gi\|117614024, gi... - gi\|78684722\|ref\|ZP_00849505.1\| curli production assembly/transport component CsgF, putative [Shewane...	6.0E-39	[1..133]	[1..129]
gi\|82717355, gi\|... - gi\|82735722\|ref\|ZP_00898584.1\| curli fiber protein CsgF, putative [Pseudomonas putida F1], gi\|827173... gi\|24985126, gi\|... - gi\|26990185\|ref\|NP_745610.1\| curli fiber protein CsgF, putative [Pseudomonas putida KT2440], gi\|2498... tr\|I7C734\|I7C734... - Curli production assembly/transport component CsgF OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_162...	2.0E-38	[18..131]	[21..135]
gi\|48731747, gi\|... - gi\|77458219\|ref\|YP_347724.1\| curli fiber protein CsgF, putative [Pseudomonas fluorescens Pf0-1], gi\|...	2.0E-38	[4..131]	[14..141]
gi\|104781913, gi... - gi\|95110900\|emb\|CAK15616.1\| putative Curli production assembly/transport component CsgF precursor [P... gi\|95110900 - gi\|95110900\|emb\|CAK15616.1\| putative Curli production assembly/transport component CsgF precursor [P...	6.0E-38	[17..131]	[22..137]
gi\|127512657, gi... - gi\|78367376\|ref\|ZP_00837646.1\| curli fiber protein CsgF, putative [Shewanella sp. PV-4], gi\|78360611...	2.0E-37	[6..136]	[11..136]
gi\|146294075, gi... - gi\|77813145\|ref\|ZP_00812426.1\| curli production assembly/transport component CsgF, putative [Shewane...	2.0E-37	[1..135]	[1..131]
SO3686 - curli production assembly/transport component CsgF putative gi\|24375184, gi\|... - gi\|24375184\|ref\|NP_719227.1\| curli production assembly/transport component CsgF, putative [Shewanell...	2.0E-37	[1..133]	[1..129]
gi\|119775990, gi... - gi\|68545641\|ref\|ZP_00585191.1\| curli production assembly/transport component CsgF, putative [Shewane...	2.0E-37	[4..135]	[3..129]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVKHAVVLL MLFSPLTWAG NMTFQFRNPN FGGNPNNGSF LLNSAQAQNS YKDPAYDNDF  60
   61 GIETPSALDN FTQAIQSQIL GGLLTNINTG KPGRMVTNDF IIDIANRDGQ LQLNVTDRKT 120
  121 GRTSTIEVSG LQTQSTDF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.527	d.38.1	Thioesterase/thiol ester dehydrase-isomerase
View	Download	0.488	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.469	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.448	d.110.4	SNARE-like
View	Download	0.442	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits