YRC Public Data Repository - Protein Structure Prediction

Protein:	lcl\|NC_016856.1_...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lcl|NC_016856.1_....

Description	E-value	Query Range	Subject Range
CSGG_ECOLI - Curli production assembly/transport component csgG precursor - Escherichia coli gi\|209911549, gi... - gi\|209918290\|ref\|YP_002292374.1\| curli production assembly/transport component [Escherichia coli SE1... gi\|215264318, gi... - gi\|215486246\|ref\|YP_002328677.1\| outer membrane lipoprotein [Escherichia coli O127:H6 str. E2348/69]... gi\|217318621, gi... - gi\|217328194\|ref\|ZP_03444276.1\| curli production assembly/transport subunit CsgG [Escherichia coli O... EG13413 - curli production assembly /transport outer membrane lipoprotein / Pore-forming OM lipoprotein for cur... gi\|218360383, gi... - gi\|218553615\|ref\|YP_002386528.1\| putative outer membrane lipoprotein involved in curli production as... gi\|218364687, gi... - gi\|218557918\|ref\|YP_002390831.1\| putative outer membrane lipoprotein involved in curli production as... gi\|218426554, gi... - gi\|218688990\|ref\|YP_002397202.1\| putative outer membrane lipoprotein involved in curli production as... gi\|218694572, gi... - gi\|218694572\|ref\|YP_002402239.1\| putative outer membrane lipoprotein involved in curli production as... gi\|218700460, gi... - gi\|218700460\|ref\|YP_002408089.1\| putative outer membrane lipoprotein involved in curli production as... gi\|188495068, gi... - gi\|75513483\|ref\|ZP_00735887.1\| COG1462: Uncharacterized protein involved in formation of curli polym... gi\|189368773, gi... - gi\|189368773\|gb\|EDU87189.1\| curli production assembly/transport subunit CsgG [Escherichia coli O157:... gi\|168789967, gi... - gi\|189370491\|gb\|EDU88907.1\| curli production assembly/transport subunit CsgG [Escherichia coli O157:... gi\|169755494, gi... - gi\|170020566\|ref\|YP_001725520.1\| curli production assembly/transport component CsgG [Escherichia col... gi\|170080689, gi... - gi\|170080689\|ref\|YP_001730009.1\| outer membrane channel lipoprotein [Escherichia coli str. K-12 subs... gi\|170684167, gi... - gi\|170684167\|ref\|YP_001744148.1\| curli production assembly/transport subunit CsgG [Escherichia coli ... CSGG_ECOL6 - Curli production assembly/transport component CsgG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7... gi\|194419370, gi... - gi\|83570516\|ref\|ZP_00921960.1\| COG1462: Uncharacterized protein involved in formation of curli polym... gi\|83586425, gi\|... - gi\|83586425\|ref\|ZP_00925059.1\| COG1462: Uncharacterized protein involved in formation of curli polym... EG13413 - curli production assembly /transport outer membrane lipoprotein / Pore-forming OM lipoprotein for cur... gi\|75190098, gi\|... - gi\|75190098\|ref\|ZP_00703365.1\| COG1462: Uncharacterized protein involved in formation of curli polym... CSGG_ECO57 - Curli production assembly/transport component CsgG OS=Escherichia coli O157:H7 GN=csgG PE=3 SV=1 gi\|194413523, gi... - gi\|75210313\|ref\|ZP_00710475.1\| COG1462: Uncharacterized protein involved in formation of curli polym... gi\|253973045, gi... - gi\|254161144\|ref\|YP_003044252.1\| outer membrane lipoprotein [Escherichia coli B str. REL606], gi\|253... gi\|75229945, gi\|... - gi\|75229945\|ref\|ZP_00716462.1\| COG1462: Uncharacterized protein involved in formation of curli polym... gi\|254287952, gi... - gi\|254287952\|ref\|YP_003053700.1\| outer membrane lipoprotein [Escherichia coli BL21(DE3)], gi\|2539772... gi\|15801154, gi\|... - gi\|15801154\|ref\|NP_287171.1\| curli production assembly/transport component, 2nd curli operon [Escher... gi\|75235963, gi\|... - gi\|75235963\|ref\|ZP_00720100.1\| COG1462: Uncharacterized protein involved in formation of curli polym... gi\|251784570, gi... - gi\|251784570\|ref\|YP_002998874.1\| hypothetical protein B21_01041 [Escherichia coli BL21], gi\|24237684... gi\|75240636, gi\|... - gi\|75240636\|ref\|ZP_00724553.1\| COG1462: Uncharacterized protein involved in formation of curli polym... gi\|238900292, gi... - gi\|238900292\|ref\|YP_002926088.1\| outer membrane lipoprotein [Escherichia coli BW2952], gi\|238861947\|... gi\|192927859, gi... - gi\|75257476\|ref\|ZP_00728979.1\| COG1462: Uncharacterized protein involved in formation of curli polym... gi\|237706982, gi... - gi\|237706982\|ref\|ZP_04537463.1\| curli production assembly/transport component CsgG [Escherichia sp. ... gi\|227886609, gi... - gi\|227886609\|ref\|ZP_04004414.1\| curli production assembly/transport component, 2nd curli operon [Esc... gi\|218704445, gi... - gi\|218704445\|ref\|YP_002411964.1\| putative outer membrane lipoprotein involved in curli production as... gi\|4062601, gi\|8... - gi\|89107882\|ref\|AP_001662.1\| outer membrane lipoprotein [Escherichia coli str. K-12 substr. W3110], ... gi\|115512350, gi... - gi\|117623226\|ref\|YP_852139.1\| assembly /transport component in curli production [Escherichia coli AP... gi\|124531171, gi... - gi\|124531171\|ref\|ZP_01701526.1\| Curli production assembly/transport component CsgG [Escherichia coli... gi\|91210185, gi\|... - gi\|91210185\|ref\|YP_540171.1\| curli production assembly/transport component CsgG precursor [Escherich... gi\|15830668, gi\|... - gi\|15830668\|ref\|NP_309441.1\| CsgG [Escherichia coli O157:H7 str. Sakai], gi\|13360874\|dbj\|BAB34837.1\|... CSGG_ECOL6 - Curli production assembly/transport component CsgG OS=Escherichia coli O6 GN=csgG PE=3 SV=1	3.0E-77	[1..277]	[1..277]
gi\|75195224, gi\|... - gi\|75195224\|ref\|ZP_00705294.1\| COG1462: Uncharacterized protein involved in formation of curli polym...	3.0E-77	[1..277]	[1..277]
gi\|74311589, gi\|... - gi\|74311589\|ref\|YP_310008.1\| curli production assembly/transport component, 2nd curli operon [Shigel...	8.0E-77	[1..277]	[1..277]
gi\|82776307, gi\|... - gi\|82776307\|ref\|YP_402656.1\| curli production assembly/transport component [Shigella dysenteriae Sd1...	4.0E-76	[1..277]	[1..277]
gi\|95110899, gi\|... - gi\|95110899\|emb\|CAK15615.1\| Curli production assembly/transport component csgG precursor [Pseudomona... gi\|95110899 - gi\|95110899\|emb\|CAK15615.1\| Curli production assembly/transport component csgG precursor [Pseudomona...	1.0E-70	[1..275]	[1..280]
gi\|24985125, gi\|... - gi\|26990184\|ref\|NP_745609.1\| curli production assembly/transport component CsgG [Pseudomonas putida ...	2.0E-70	[1..275]	[1..282]
gi\|59481113, gi\|... - gi\|59713012\|ref\|YP_205788.1\| curli production assembly/transport outer membrane lipoprotein componen... gi\|197317814, gi... - gi\|197336324\|ref\|YP_002157197.1\| curli production assembly/transport component CsgG [Vibrio fischeri...	3.0E-70	[1..274]	[1..276]
gi\|82717356, gi\|... - gi\|82735723\|ref\|ZP_00898585.1\| curli fiber membrane-associated lipoprotein CsgG [Pseudomonas putida ... tr\|I7B820\|I7B820... - Curli production assembly/transport component CsgG OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_162...	2.0E-69	[1..275]	[1..283]
gi\|77458220, gi\|... - gi\|77458220\|ref\|YP_347725.1\| curli production assembly/transport component CsgG [Pseudomonas fluores...	1.0E-67	[1..273]	[1..280]
gi\|127512658, gi... - gi\|78367375\|ref\|ZP_00837645.1\| Curli production assembly/transport component CsgG [Shewanella sp. PV...	9.0E-64	[1..268]	[1..265]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLLILVAV LLLSGCLTAP PKQAAKPTLM PRAQSYKDLT HLPAPTGKIF VSVYNIQDET  60
   61 GQFKPYPASN FSTAVPQSAT AMLVTALKDS RWFIPLERQG LQNLLNERKI IRAAQENGTV 120
  121 AMNNRIPLQS LTAANIMVEG SIIGYESNVK SGGVGARYFG IGADTQYQLD QIAVNLRVVN 180
  181 VSTGEILSSV NTSKTILSYE VQAGVFRFID YQRLLEGEIG YTSNEPVMLC LMSAIETGVI 240
  241 FLINDGIDRG LWDLQNKADR QNDILVKYRE LSVPPES

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.19
Match:	2iqiA
Description:	No description for 2iqiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits