YRC Public Data Repository - Protein Structure Prediction

Protein:	lcl\|NC_016856.1_...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lcl|NC_016856.1_....

Description	E-value	Query Range	Subject Range
IRAP_ECOL6 - Anti-adapter protein iraP OS=Escherichia coli O6 GN=iraP PE=3 SV=1 sp\|B7UJK6\|IRAP_ECO27 - Anti-adapter protein iraP OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=iraP PE=3 SV=1 gi\|237707629, gi... - gi\|237707629\|ref\|ZP_04538110.1\| anti-adapter protein iraP [Escherichia sp. 3_2_53FAA], gi\|226898839\|... gi\|227838700, gi... - gi\|227884614\|ref\|ZP_04002419.1\| Anti-adapter protein iraP [Escherichia coli 83972], gi\|227838700\|gb\|... IRAP_ECOUT - Anti-adapter protein IraP OS=Escherichia coli (strain UTI89 / UPEC) GN=iraP PE=3 SV=1 IRAP_ECOL5 - Anti-adapter protein IraP OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=iraP PE=3 SV=1 gi\|190906221, gi... - gi\|75238710\|ref\|ZP_00722698.1\| hypothetical protein EcolF_01003368 [Escherichia coli F11], gi\|191173... IRAP_ECOK1 - Anti-adapter protein IraP OS=Escherichia coli O1:K1 / APEC GN=iraP PE=3 SV=1 IRAP_ECO27 - Anti-adapter protein IraP OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=iraP PE=3 SV=1 IRAP_ECOL6 - Anti-adapter protein IraP OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=iraP PE=... IRAP_ECO45 - Anti-adapter protein IraP OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=iraP PE=3 SV=1 IRAP_ECO81 - Anti-adapter protein IraP OS=Escherichia coli O81 (strain ED1a) GN=iraP PE=3 SV=1	139.0	[0..3]	[88..1]
IRAP_ECOLC - Anti-adapter protein IraP OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=iraP PE=3 SV... gi\|168756911, gi... - gi\|189355962\|gb\|EDU74381.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168749832, gi... - gi\|188015858\|gb\|EDU53980.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189362544, gi... - gi\|189362544\|gb\|EDU80963.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168761575, gi... - gi\|189367979\|gb\|EDU86395.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|188999348, gi... - gi\|188999348\|gb\|EDU68334.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168776325, gi... - gi\|187768317\|gb\|EDU32161.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... YAIB_ECOLI - Hypothetical protein yaiB - Escherichia coli EG11256 - anti-RssB factor, RpoS stabilzer during Pi starvation; anti-adapter protein / Anti-RssB factor, RpoS... gi\|188494975, gi... - gi\|75512441\|ref\|ZP_00734980.1\| hypothetical protein Ecol5_01003356 [Escherichia coli 53638], gi\|1884... IRAP_ECO55 - Anti-adapter protein IraP OS=Escherichia coli (strain 55989 / EAEC) GN=iraP PE=3 SV=1 IRAP_SHISS - Anti-adapter protein IraP OS=Shigella sonnei (strain Ss046) GN=iraP PE=3 SV=1 gi\|217321920, gi... - gi\|217325699\|ref\|ZP_03441783.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|192958051, gi... - gi\|75237236\|ref\|ZP_00721283.1\| hypothetical protein EcolE1_01001694 [Escherichia coli E110019], gi\|1... gi\|193065150, gi... - gi\|75256755\|ref\|ZP_00728360.1\| hypothetical protein EcolE2_01003328 [Escherichia coli E22], gi\|19306... IRAP_ECOBW - Anti-adapter protein IraP OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=iraP PE=3 SV=1 gi\|124528905, gi... - gi\|124528905\|ref\|ZP_01700090.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500242\|gb... gi\|251783886, gi... - gi\|251783886\|ref\|YP_002998190.1\| hypothetical protein B21_00333 [Escherichia coli BL21], gi\|24237615... gi\|253774636, gi... - gi\|254287251\|ref\|YP_003052999.1\| hypothetical protein ECD_00329 [Escherichia coli BL21(DE3)], gi\|253... gi\|85674523, gi\|... - gi\|89107253\|ref\|AP_001033.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|254160448, gi... - gi\|254160448\|ref\|YP_003043556.1\| hypothetical protein ECB_00329 [Escherichia coli B str. REL606], gi... gi\|254791560, gi... - gi\|254791560\|ref\|YP_003076397.1\| anti-adaptor protein [Escherichia coli O157:H7 str. TW14359], gi\|25... gi\|83570350, gi\|... - gi\|83570350\|ref\|ZP_00921795.1\| hypothetical protein Sdys1_01001316 [Shigella dysenteriae 1012], gi\|1... gi\|168800252, gi... - gi\|189377370\|gb\|EDU95786.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|194438917, gi... - gi\|83585698\|ref\|ZP_00924340.1\| hypothetical protein Ecol1_01003114 [Escherichia coli 101-1], gi\|1944... gi\|168786216, gi... - gi\|189373718\|gb\|EDU92134.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|195938558 - gi\|195938558\|ref\|ZP_03083940.1\| hypothetical protein EscherichcoliO157_19367 [Escherichia coli O157:... IRAP_ECODH - Anti-adapter protein IraP OS=Escherichia coli (strain K12 / DH10B) GN=iraP PE=3 SV=1 gi\|194428859, gi... - gi\|75209939\|ref\|ZP_00710128.1\| hypothetical protein EcolB_01002883 [Escherichia coli B171], gi\|19442... gi\|208732354, gi... - gi\|208815706\|ref\|ZP_03256885.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|191166724, gi... - gi\|75230108\|ref\|ZP_00716612.1\| hypothetical protein EcolB7_01001655 [Escherichia coli B7A], gi\|19116... gi\|208726350, gi... - gi\|208806549\|ref\|ZP_03248886.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... IRAP_ECO24 - Anti-adapter protein IraP OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=iraP PE=3 SV=1 IRAP_ECO5E - Anti-adapter protein IraP OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=iraP PE=3 SV=1 IRAP_ECOHS - Anti-adapter protein IraP OS=Escherichia coli O9:H4 (strain HS) GN=iraP PE=3 SV=1 gi\|208823091, gi... - gi\|208823091\|ref\|ZP_03263409.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|13359889, gi\|... - gi\|15829686\|ref\|NP_308459.1\| hypothetical protein ECs0432 [Escherichia coli O157:H7 str. Sakai], gi\|... IRAP_ECO57 - Anti-adapter protein IraP OS=Escherichia coli O157:H7 GN=iraP PE=3 SV=1 gi\|12513222, gi\|... - gi\|15800108\|ref\|NP_286120.1\| hypothetical protein Z0478 [Escherichia coli O157:H7 EDL933], gi\|125132... EG11256 - anti-RssB factor, RpoS stabilzer during Pi starvation; anti-adapter protein / Anti-RssB factor, RpoS...	138.0	[0..3]	[88..1]
gi\|30061805, gi\|... - gi\|30061805\|ref\|NP_835976.1\| hypothetical protein S0253 [Shigella flexneri 2a str. 2457T], gi\|300400... IRAP_SHIFL - Anti-adapter protein IraP OS=Shigella flexneri GN=iraP PE=3 SV=1 gi\|24050452, gi\|... - gi\|24111676\|ref\|NP_706186.1\| hypothetical protein SF0231 [Shigella flexneri 2a str. 301], gi\|2405045... IRAP_SHIF8 - Anti-adapter protein IraP OS=Shigella flexneri serotype 5b (strain 8401) GN=iraP PE=3 SV=1	137.0	[0..3]	[88..1]
IRAP_SHIDS - Anti-adapter protein IraP OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=iraP PE=3 SV=1	136.0	[0..3]	[88..1]
IRAP_ESCF3 - Anti-adapter protein IraP OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN... IRAP_ESCFE, YAIB... - Uncharacterized protein yaiB - Escherichia fergusonii, Anti-adapter protein iraP OS=Escherichia ferg...	135.0	[0..3]	[88..1]
IRAP_SHIB3 - Anti-adapter protein IraP OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=iraP PE=3 S...	132.0	[0..3]	[88..1]
IRAP_SHIBS - Anti-adapter protein IraP OS=Shigella boydii serotype 4 (strain Sb227) GN=iraP PE=3 SV=1	132.0	[0..3]	[88..1]
IRAP_SALTY - Anti-adapter protein iraP OS=Salmonella typhimurium GN=iraP PE=2 SV=2 IRAP_SALPA - Anti-adapter protein IraP OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=iraP PE=3 SV=1 IRAP_SALTI - Anti-adapter protein iraP OS=Salmonella typhi GN=iraP PE=3 SV=2 IRAP_SALCH - Anti-adapter protein IraP OS=Salmonella choleraesuis (strain SC-B67) GN=iraP PE=3 SV=1 IRAP_SALPB - Anti-adapter protein iraP OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=iraP PE=3 SV=1 IRAP_SALPA - Anti-adapter protein iraP OS=Salmonella paratyphi A GN=iraP PE=3 SV=1 IRAP_SALCH - Anti-adapter protein iraP OS=Salmonella choleraesuis GN=iraP PE=3 SV=1 IRAP_SALDC - Anti-adapter protein IraP OS=Salmonella dublin (strain CT_02021853) GN=iraP PE=3 SV=1 IRAP_SALTI - Anti-adapter protein IraP OS=Salmonella typhi GN=iraP PE=3 SV=2 IRAP_SALPK - Anti-adapter protein IraP OS=Salmonella paratyphi A (strain AKU_12601) GN=iraP PE=3 SV=1 IRAP_SALTY - Anti-adapter protein iraP OS=Salmonella typhimurium GN=iraP PE=2 SV=2 gi\|197262743, gi... - gi\|197262743\|ref\|ZP_03162817.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... IRAP_SALA4 - Anti-adapter protein IraP OS=Salmonella agona (strain SL483) GN=iraP PE=3 SV=1 IRAP_SALCH - Anti-adapter protein iraP OS=Salmonella choleraesuis GN=iraP PE=3 SV=1 IRAP_SALSV - Anti-adapter protein IraP OS=Salmonella schwarzengrund (strain CVM19633) GN=iraP PE=3 SV=1 gi\|194456079, gi... - gi\|194469715\|ref\|ZP_03075699.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... IRAP_SALHS - Anti-adapter protein IraP OS=Salmonella heidelberg (strain SL476) GN=iraP PE=3 SV=1 IRAP_SALNS - Anti-adapter protein IraP OS=Salmonella newport (strain SL254) GN=iraP PE=3 SV=1 gi\|168819014, gi... - gi\|205344004\|gb\|EDZ30768.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168465465, gi... - gi\|195631931\|gb\|EDX50451.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168261191, gi... - gi\|205349691\|gb\|EDZ36322.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205339854, gi... - gi\|205339854\|gb\|EDZ26618.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168237490, gi... - gi\|197289546\|gb\|EDY28909.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168232349, gi... - gi\|205333340\|gb\|EDZ20104.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|167992226, gi... - gi\|205329501\|gb\|EDZ16265.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205323499, gi... - gi\|205323499\|gb\|EDZ11338.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|238911484 - gi\|238911484\|ref\|ZP_04655321.1\| hypothetical protein SentesTe_10150 [Salmonella enterica subsp. ente... gi\|213853000 - gi\|213853000\|ref\|ZP_03382532.1\| hypothetical protein SentesT_09136 [Salmonella enterica subsp. enter... gi\|213647684 - gi\|213647684\|ref\|ZP_03377737.1\| hypothetical protein SentesTy_10617 [Salmonella enterica subsp. ente... gi\|213162156 - gi\|213162156\|ref\|ZP_03347866.1\| hypothetical protein Salmoneentericaenterica_20033 [Salmonella enter... gi\|204927356, gi... - gi\|204927356\|ref\|ZP_03218558.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|200390057, gi... - gi\|200390057\|ref\|ZP_03216668.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... IRAP_SALTY - Anti-adapter protein IraP OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=iraP PE... IRAP_SALPB - Anti-adapter protein IraP OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=iraP PE=3 SV=1	129.0	[0..3]	[88..1]
gi\|38505257 - gi\|38505257\|gb\|AAR23118.1\| unknown [Escherichia coli]	102.0	[0..30]	[88..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMKNLIAEL LLKLAQKEEE SKELVAQVEA LEIIVTAMLR NMAQNEQEML IRQVEGALEG  60
   61 VKPDASVPDH DTELLRQYVK KLLRHPRH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.940	a.45.1	Glutathione S-transferase (GST), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits