YRC Public Data Repository - Protein Structure Prediction

Protein:	lcl\|NC_016856.1_...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lcl|NC_016856.1_....

Description	E-value	Query Range	Subject Range
gi\|56126656, gi\|... - gi\|56412399\|ref\|YP_149474.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar...	0.0	[1..414]	[1..414]
gi\|83585189, gi\|... - gi\|83585189\|ref\|ZP_00923839.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli 1... gi\|208733791, gi... - gi\|208812514\|ref\|ZP_03253843.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4045], g... gi\|157156576, gi... - gi\|75189189\|ref\|ZP_00702456.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli E... gi\|208807612, gi... - gi\|208807612\|ref\|ZP_03249949.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4206], g... gi\|209159489, gi... - gi\|209398089\|ref\|YP_002268697.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4115], ... gi\|208818936, gi... - gi\|208818936\|ref\|ZP_03259256.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4042], g... gi\|191167782, gi... - gi\|75229062\|ref\|ZP_00715642.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli B... gi\|217322537, gi... - gi\|217326316\|ref\|ZP_03442400.1\| cell division protein FtsW [Escherichia coli O157:H7 str. TW14588], ... gi\|75234326, gi\|... - gi\|75234326\|ref\|ZP_00718704.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli E... gi\|209910541, gi... - gi\|209917282\|ref\|YP_002291366.1\| cell division protein FtsW [Escherichia coli SE11], gi\|209910541\|db... gi\|75194306, gi\|... - gi\|75194306\|ref\|ZP_00704376.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli H... gi\|218363798, gi... - gi\|218557029\|ref\|YP_002389942.1\| cell division protein FtsW [Escherichia coli S88], gi\|218363798\|emb... gi\|75209390, gi\|... - gi\|75209390\|ref\|ZP_00709622.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli B... gi\|218359440, gi... - gi\|218552672\|ref\|YP_002385585.1\| cell division protein FtsW [Escherichia coli IAI1], gi\|218359440\|em... gi\|189000486, gi... - gi\|189000486\|gb\|EDU69472.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|168776933, gi... - gi\|187767757\|gb\|EDU31601.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|168801516, gi... - gi\|189376371\|gb\|EDU94787.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|189370784, gi... - gi\|189370784\|gb\|EDU89200.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|170079728, gi... - gi\|170079728\|ref\|YP_001729048.1\| cell division membrane protein [Escherichia coli str. K-12 substr. ... gi\|169756483, gi... - gi\|170021555\|ref\|YP_001726509.1\| cell division protein FtsW [Escherichia coli ATCC 8739], gi\|1697564... gi\|195939305 - gi\|195939305\|ref\|ZP_03084687.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4024] gi\|170682663, gi... - gi\|170682663\|ref\|YP_001742211.1\| cell division protein FtsW [Escherichia coli SMS-3-5], gi\|170520381... gi\|227885006, gi... - gi\|227885006\|ref\|ZP_04002811.1\| MPE family murein precursor exporter [Escherichia coli 83972], gi\|22... gi\|237704238, gi... - gi\|237704238\|ref\|ZP_04534719.1\| cell division protein FtsW [Escherichia sp. 3_2_53FAA], gi\|226902150... gi\|238861520, gi... - gi\|238899490\|ref\|YP_002925286.1\| integral membrane protein involved in stabilizing FstZ ring during ... gi\|242375925, gi... - gi\|251783652\|ref\|YP_002997956.1\| hypothetical protein B21_00089 [Escherichia coli BL21], gi\|24237592... gi\|254287014, gi... - gi\|254287014\|ref\|YP_003052762.1\| integral membrane protein involved in stabilizing FstZ ring during ... gi\|254037504, gi... - gi\|254037504\|ref\|ZP_04871581.1\| cell division protein FtsW [Escherichia sp. 1_1_43], gi\|226840610\|gb... FTSW_ECOLI - Cell division protein ftsW - Escherichia coli gi\|253972112, gi... - gi\|254160211\|ref\|YP_003043319.1\| integral membrane protein involved in stabilizing FstZ ring during ... gi\|254791226, gi... - gi\|254791226\|ref\|YP_003076063.1\| cell division membrane protein [Escherichia coli O157:H7 str. TW143... gi\|218693558, gi... - gi\|218693558\|ref\|YP_002401225.1\| cell division protein FtsW [Escherichia coli 55989], gi\|218350290\|e... gi\|218687966, gi... - gi\|218687966\|ref\|YP_002396178.1\| cell division protein FtsW [Escherichia coli ED1a], gi\|218425530\|em... gi\|218703349, gi... - gi\|218703349\|ref\|YP_002410868.1\| cell division protein FtsW [Escherichia coli UMN026], gi\|218430446\|... gi\|218698512, gi... - gi\|218698512\|ref\|YP_002406141.1\| cell division protein FtsW [Escherichia coli IAI39], gi\|218368498\|e... gi\|89106972, gi\|... - gi\|89106972\|ref\|AP_000752.1\| integral membrane protein involved in stabilising FstZ ring during cell... gi\|15829347, gi\|... - gi\|15829347\|ref\|NP_308120.1\| cell division protein FtsW [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|110640302, gi... - gi\|110640302\|ref\|YP_668030.1\| cell division protein FtsW [Escherichia coli 536], gi\|110341894\|gb\|ABG... gi\|189357066, gi... - gi\|189357066\|gb\|EDU75485.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|168751401, gi... - gi\|188014537\|gb\|EDU52659.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|168771313, gi... - gi\|189359920\|gb\|EDU78339.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4486], gi\|16... FTSW_ECO57 - Putative lipid II flippase FtsW OS=Escherichia coli O157:H7 GN=ftsW PE=3 SV=1 gi\|189365908, gi... - gi\|189365908\|gb\|EDU84324.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4501], gi\|16... EG10344 - lipid II flippase; integral membrane protein; FtsZ ring stabilizer / Lipid II flippase; divisome pro... gi\|12512792, gi\|... - gi\|15799773\|ref\|NP_285785.1\| cell division protein FtsW [Escherichia coli O157:H7 EDL933], gi\|125127... FTSW_ECOL6 - Lipid II flippase FtsW OS=Escherichia coli O6 GN=ftsW PE=3 SV=1 gi\|117622375, gi... - gi\|117622375\|ref\|YP_851288.1\| cell division protein FtsW [Escherichia coli APEC O1], gi\|115511499\|gb... gi\|124499081, gi... - gi\|124530657\|ref\|ZP_01701241.1\| cell division protein FtsW [Escherichia coli B], gi\|124499081\|gb\|EAY... FTSW_ECOL6 - Putative lipid II flippase FtsW OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ft... EG10344 - lipid II flippase; integral membrane protein; FtsZ ring stabilizer / Lipid II flippase; divisome pro... gi\|75511687, gi\|... - gi\|75511687\|ref\|ZP_00734325.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli 5... gi\|73854185, gi\|... - gi\|74310708\|ref\|YP_309127.1\| cell division protein FtsW [Shigella sonnei Ss046], gi\|73854185\|gb\|AAZ8... gi\|75236007, gi\|... - gi\|75236007\|ref\|ZP_00720143.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli F... gi\|75256039, gi\|... - gi\|75256039\|ref\|ZP_00727752.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli E... gi\|81239644, gi\|... - gi\|82775496\|ref\|YP_401843.1\| cell division protein FtsW [Shigella dysenteriae Sd197], gi\|81239644\|gb...	0.0	[1..414]	[1..414]
gi\|91070727, gi\|... - gi\|91209153\|ref\|YP_539139.1\| cell division protein FtsW [Escherichia coli UTI89], gi\|91070727\|gb\|ABE... gi\|26246022, gi\|... - gi\|26246022\|ref\|NP_752061.1\| cell division protein FtsW [Escherichia coli CFT073], gi\|26106419\|gb\|AA...	0.0	[1..414]	[2..415]
gi\|56383150, gi\|... - gi\|56479599\|ref\|NP_706044.2\| cell division protein FtsW [Shigella flexneri 2a str. 301], gi\|56383150... gi\|110613701, gi... - gi\|110804153\|ref\|YP_687673.1\| cell division protein FtsW [Shigella flexneri 5 str. 8401], gi\|1106137... gi\|30039898, gi\|... - gi\|30061656\|ref\|NP_835827.1\| cell division protein FtsW [Shigella flexneri 2a str. 2457T], gi\|300398...	0.0	[1..414]	[1..414]
gi\|75175646, gi\|... - gi\|75175646\|ref\|ZP_00695854.1\| COG0772: Bacterial cell division membrane protein [Shigella boydii BS... gi\|81244104, gi\|... - gi\|82542693\|ref\|YP_406640.1\| cell division protein FtsW [Shigella boydii Sb227], gi\|81244104\|gb\|ABB6...	0.0	[1..414]	[1..414]
FTSW_PSEA6 - Putative lipid II flippase FtsW OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=ftsW ...	0.0	[23..414]	[6..398]
gi\|88774162, gi\|... - gi\|88794396\|ref\|ZP_01110104.1\| cell division protein FtsW [Alteromonas macleodii 'Deep ecotype'], gi...	3.0E-99	[44..413]	[26..395]
gi\|150260411, gi... - gi\|150260411\|ref\|ZP_01917139.1\| cell division protein FtsW [Yersinia pestis CA88-4125], gi\|149289819... gi\|186894043, gi... - gi\|186894043\|ref\|YP_001871155.1\| cell division protein FtsW [Yersinia pseudotuberculosis PB1/+], gi\|... gi\|145212039, gi... - gi\|145600343\|ref\|YP_001164419.1\| cell division protein FtsW [Yersinia pestis Pestoides F], gi\|145212... gi\|77631667, gi\|... - gi\|77631667\|ref\|ZP_00794253.1\| COG0772: Bacterial cell division membrane protein [Yersinia pseudotub... gi\|165937782, gi... - gi\|89102565\|ref\|ZP_01175189.1\| COG0772: Bacterial cell division membrane protein [Yersinia pestis bi... gi\|108781451, gi... - gi\|108809538\|ref\|YP_653454.1\| cell division protein FtsW [Yersinia pestis Antiqua], gi\|108781451\|gb\|... gi\|229682116, gi... - gi\|229900777\|ref\|ZP_04515901.1\| cell division membrane protein [Yersinia pestis Nepal516], gi\|229682... gi\|165928222, gi... - gi\|165928222\|ref\|ZP_02224054.1\| cell division protein FtsW [Yersinia pestis biovar Orientalis str. F... gi\|229705998, gi... - gi\|229837055\|ref\|ZP_04457220.1\| cell division membrane protein [Yersinia pestis Pestoides A], gi\|229... gi\|229840442, gi... - gi\|229840442\|ref\|ZP_04460601.1\| cell division membrane protein [Yersinia pestis biovar Orientalis st... gi\|166206862, gi... - gi\|166212116\|ref\|ZP_02238151.1\| cell division protein FtsW [Yersinia pestis biovar Antiqua str. B420... gi\|229689892, gi... - gi\|229843016\|ref\|ZP_04463166.1\| cell division membrane protein [Yersinia pestis biovar Orientalis st... gi\|166008774, gi... - gi\|166008774\|ref\|ZP_02229672.1\| cell division protein FtsW [Yersinia pestis biovar Antiqua str. E197... gi\|25301512 - pir\|\|AG0068 cell division protein FtsW [imported] - Yersinia pestis (strain CO92) gi\|166960154, gi... - gi\|167422017\|ref\|ZP_02313770.1\| cell division protein FtsW [Yersinia pestis biovar Orientalis str. M... gi\|167401326, gi... - gi\|167401326\|ref\|ZP_02306826.1\| cell division protein FtsW [Yersinia pestis biovar Antiqua str. UG05... gi\|45443362, gi\|... - gi\|45443362\|ref\|NP_994901.1\| cell division protein FtsW [Yersinia pestis biovar Microtus str. 91001]... gi\|170025734, gi... - gi\|170025734\|ref\|YP_001722239.1\| cell division protein FtsW [Yersinia pseudotuberculosis YPIII], gi\|... gi\|21960599, gi\|... - gi\|22127501\|ref\|NP_670924.1\| cell division protein FtsW [Yersinia pestis KIM], gi\|21960599\|gb\|AAM871... gi\|167469523 - gi\|167469523\|ref\|ZP_02334227.1\| cell division protein FtsW [Yersinia pestis FV-1] gi\|16120882, gi\|... - gi\|218927750\|ref\|YP_002345625.1\| cell division protein FtsW [Yersinia pestis CO92], gi\|16120882\|ref\|... gi\|51588319, gi\|... - gi\|51595037\|ref\|YP_069228.1\| cell division protein FtsW [Yersinia pseudotuberculosis IP 32953], gi\|5... Q66EK6\|Q66EK6_YERPS - Cell division membrane protein FtsW precursor - Yersinia pseudotuberculosis	6.0E-99	[19..414]	[5..400]
gi\|162353806, gi... - gi\|77633642\|ref\|ZP_00795764.1\| COG0772: Bacterial cell division membrane protein [Yersinia pestis An...	6.0E-99	[19..414]	[5..400]
gi\|77976101 - gi\|77976101\|ref\|ZP_00831634.1\| COG0772: Bacterial cell division membrane protein [Yersinia frederiks...	1.0E-98	[19..414]	[5..400]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSLPRLRM PRVPGFGLLA WLFAALKGWV MASRDKDADS LIMYDRTLLW LTFGLAAIGF  60
   61 VMVTSASMPV GQRLANDPFL FAKRDALYIF LAFCLAMVTL RLPMTFWQKY STTMLIASII 120
  121 MLLIVLVVGS SVNGASRWIA LGPLRIQPAE FTKLSLFCYL ANYLVRKVDE VR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [173-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNLRGFLKPM GVILVLAVLL LAQPDLGTVV VLFVTTLAML FLAGAKLWQF IAIIGMGISA  60
   61 VILLILAEPY RIRRVTSFWN PWEDPFGSGY QLTQSLMAFG RGEIWG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [279-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGLGNSVQKL EYLPEAHTDF IFAIIGEELG YIGVVLALLM VFFVAFRAMS IGRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [333-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALEIDHRFSG FLACSIGIWF SFQALVNVGA AAGMLPTKGL TLPLISYGGS SLLIMSTAIM  60
   61 FLLRIDYETR LEKAQAFTRG SR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits