YRC Public Data Repository - Protein Structure Prediction

Protein:	YACG_VIBVU
Organism:	Vibrio vulnificus CMCP6
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YACG_VIBVU.

Description	E-value	Query Range	Subject Range
gi\|37680968, gi\|... - gi\|37680968\|ref\|NP_935577.1\| zinc-binding protein [Vibrio vulnificus YJ016], gi\|37199718\|dbj\|BAC9554...	106.0	[0..1]	[64..8]
gi\|150840012, gi... - gi\|75430206\|ref\|ZP_00732687.1\| Dephospho-CoA kinase [Actinobacillus succinogenes 130Z], gi\|74276641\|...	104.0	[0..1]	[59..216]
gi\|24158901 - gi\|24158901\|pdb\|1LV3\|A Chain A, Solution Nmr Structure Of Zinc Finger Protein Yacg From Escherichia ...	101.0	[0..1]	[63..4]
YACG_VIBPA, Y252... - (Q87LT2) Hypothetical UPF0243 zinc-binding protein VP2529, DNA gyrase inhibitor YacG OS=Vibrio parah... YACG_VIBPA - DNA gyrase inhibitor YacG OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=yacG PE... gi\|149747874, gi... - gi\|153838714\|ref\|ZP_01991381.1\| conserved domain protein [Vibrio parahaemolyticus AQ3810], gi\|149747...	100.0	[0..1]	[64..1]
gi\|12512807, gi\|... - gi\|15799785\|ref\|NP_285797.1\| zinc-binding protein [Escherichia coli O157:H7 EDL933], gi\|12512807\|gb\|... EG12314 - DNA gyrase inhibitor / DNA gyrase inhibitor; Zn(2+)-binding protein gi\|75236903, gi\|... - gi\|75236903\|ref\|ZP_00720965.1\| COG3024: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|193063249, gi... - gi\|75258905\|ref\|ZP_00730295.1\| COG3024: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75226880, gi\|... - gi\|75226880\|ref\|ZP_00713777.1\| COG3024: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75233829, gi\|... - gi\|75233829\|ref\|ZP_00718299.1\| COG3024: Uncharacterized protein conserved in bacteria [Escherichia c... YACG_SHIBS - DNA gyrase inhibitor YacG OS=Shigella boydii serotype 4 (strain Sb227) GN=yacG PE=3 SV=1 gi\|89106983, gi\|... - gi\|89106983\|ref\|AP_000763.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... YACG_SHISS - DNA gyrase inhibitor YacG OS=Shigella sonnei (strain Ss046) GN=yacG PE=3 SV=1 YACG_SHIDS - DNA gyrase inhibitor YacG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yacG PE=3 SV=1 YACG_ECOHS - DNA gyrase inhibitor YacG OS=Escherichia coli O9:H4 (strain HS) GN=yacG PE=3 SV=1 gi\|75208414, gi\|... - gi\|75208414\|ref\|ZP_00708746.1\| COG3024: Uncharacterized protein conserved in bacteria [Escherichia c... EG12314 - DNA gyrase inhibitor / DNA gyrase inhibitor; Zn(2+)-binding protein YACG_SHIB3 - DNA gyrase inhibitor YacG OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yacG PE=3 S... YACG_ECO24 - DNA gyrase inhibitor YacG OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yacG PE=3 SV=1 gi\|208813702, gi... - gi\|208813702\|ref\|ZP_03255031.1\| zinc-binding protein YacG [Escherichia coli O157:H7 str. EC4045], gi... gi\|208725935, gi... - gi\|208806134\|ref\|ZP_03248471.1\| zinc-binding protein YacG [Escherichia coli O157:H7 str. EC4206], gi... YACG_ECO5E - DNA gyrase inhibitor YacG OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yacG PE=3 SV=1 gi\|208739855, gi... - gi\|208819732\|ref\|ZP_03260052.1\| zinc-binding protein YacG [Escherichia coli O157:H7 str. EC4042], gi... YACG_ECO27 - DNA gyrase inhibitor YacG OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yacG PE=3 SV=1 YACG_ECOSE - DNA gyrase inhibitor YacG OS=Escherichia coli (strain SE11) GN=yacG PE=3 SV=1 YACG_ECO45 - DNA gyrase inhibitor YacG OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yacG PE=3 SV=1 gi\|217322419, gi... - gi\|217326198\|ref\|ZP_03442282.1\| zinc-binding protein YacG [Escherichia coli O157:H7 str. TW14588], g... gi\|187767853, gi... - gi\|187767853\|gb\|EDU31697.1\| zinc-binding protein YacG [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|168770432, gi... - gi\|189360723\|gb\|EDU79142.1\| zinc-binding protein YacG [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|189370809, gi... - gi\|189370809\|gb\|EDU89225.1\| zinc-binding protein YacG [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|168781987, gi... - gi\|189000417\|gb\|EDU69403.1\| zinc-binding protein YacG [Escherichia coli O157:H7 str. EC4076], gi\|168... YACG_ECOSM - DNA gyrase inhibitor YacG OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yacG PE=3 SV=1 YACG_ECODH - DNA gyrase inhibitor YacG OS=Escherichia coli (strain K12 / DH10B) GN=yacG PE=3 SV=1 gi\|195938218 - gi\|195938218\|ref\|ZP_03083600.1\| zinc-binding protein [Escherichia coli O157:H7 str. EC4024] gi\|188493366, gi... - gi\|188493366\|ref\|ZP_03000636.1\| zinc-binding protein [Escherichia coli 53638], gi\|188488565\|gb\|EDU63... gi\|124530604, gi... - gi\|124530604\|ref\|ZP_01701207.1\| protein of unknown function DUF329 [Escherichia coli B], gi\|12449913... sp\|B7UIF0\|YACG_ECO27 - UPF0243 zinc-binding protein yacG OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yacG PE=3 ... gi\|15829359, gi\|... - gi\|15829359\|ref\|NP_308132.1\| zinc-binding protein [Escherichia coli O157:H7 str. Sakai], gi\|13359561... YACG_ECOL5 - DNA gyrase inhibitor YacG OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yacG PE=3 SV=1 YACG_SHIF8 - DNA gyrase inhibitor YacG OS=Shigella flexneri serotype 5b (strain 8401) GN=yacG PE=3 SV=1 YACG_ECOUT - DNA gyrase inhibitor YacG OS=Escherichia coli (strain UTI89 / UPEC) GN=yacG PE=3 SV=1 gi\|24050305, gi\|... - gi\|24111546\|ref\|NP_706056.1\| zinc-binding protein [Shigella flexneri 2a str. 301], gi\|24050305\|gb\|AA... YACG_SHIFL - DNA gyrase inhibitor YacG OS=Shigella flexneri GN=yacG PE=3 SV=1 YACG_ECO57 - DNA gyrase inhibitor YacG OS=Escherichia coli O157:H7 GN=yacG PE=3 SV=1 gi\|30039910, gi\|... - gi\|30061668\|ref\|NP_835839.1\| zinc-binding protein [Shigella flexneri 2a str. 2457T], gi\|30039910\|gb\|... YACG_ECOLC - DNA gyrase inhibitor YacG OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yacG PE=3 SV... gi\|237704249, gi... - gi\|237704249\|ref\|ZP_04534730.1\| zinc-binding protein yacG [Escherichia sp. 3_2_53FAA], gi\|226902161\|... YACG_ECOBW - DNA gyrase inhibitor YacG OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yacG PE=3 SV=1 gi\|242375936, gi... - gi\|251783663\|ref\|YP_002997967.1\| hypothetical protein B21_00100 [Escherichia coli BL21], gi\|24237593... gi\|254287025, gi... - gi\|254287025\|ref\|YP_003052773.1\| zinc-binding protein [Escherichia coli BL21(DE3)], gi\|253976332\|gb\|... gi\|168755710, gi... - gi\|189356980\|gb\|EDU75399.1\| zinc-binding protein YacG [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|254037516, gi... - gi\|254037516\|ref\|ZP_04871593.1\| zinc-binding protein [Escherichia sp. 1_1_43], gi\|226840622\|gb\|EEH72... gi\|168752858, gi... - gi\|188013500\|gb\|EDU51622.1\| zinc-binding protein YacG [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|253972123, gi... - gi\|254160222\|ref\|YP_003043330.1\| zinc-binding protein [Escherichia coli B str. REL606], gi\|253972123... YACG_ECOLI - UPF0243 zinc-binding protein yacG - Escherichia coli gi\|254791237, gi... - gi\|254791237\|ref\|YP_003076074.1\| zinc-binding protein [Escherichia coli O157:H7 str. TW14359], gi\|25...	100.0	[0..1]	[63..1]
gi\|83569679 - gi\|83569679\|ref\|ZP_00921129.1\| COG3024: Uncharacterized protein conserved in bacteria [Shigella dyse...	100.0	[0..1]	[63..1]
gi\|90326962, gi\|... - gi\|90411984\|ref\|ZP_01219991.1\| zinc-binding protein [Photobacterium profundum 3TCK], gi\|90326962\|gb\|...	98.0	[0..2]	[62..8]
YACG_PHOPR - DNA gyrase inhibitor YacG OS=Photobacterium profundum (strain SS9) GN=yacG PE=3 SV=1 YACG_PHOPR, Y320... - DNA gyrase inhibitor YacG OS=Photobacterium profundum GN=yacG PE=3 SV=1, UPF0243 zinc-binding protei...	98.0	[0..2]	[62..13]
gi\|90580237, gi\|... - gi\|90580237\|ref\|ZP_01236044.1\| zinc-binding protein [Vibrio angustum S14], gi\|90438539\|gb\|EAS63723.1...	98.0	[0..2]	[62..8]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKITIVKCP QCGTNVEWGE QSPHRPFCSK KCQMIDFGEW ADEENAIPGA PDMSDSDGWS  60
   61 EEQY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.221849
Match:	1lv3A
Description:	Hypothetical zinc finger protein YacG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.684232803797358	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: