YRC Public Data Repository - Protein Structure Prediction

Protein:	RLA1_OSCTI
Organism:	Oscheius tipulae
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA1_OSCTI.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	136.0	[0..3]	[112..2]
gi\|38086394, gi\|... - gi\|94408796\|ref\|XP_993025.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Mus mu...	122.0	[0..1]	[112..1]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	122.0	[0..1]	[112..1]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	118.0	[0..1]	[112..1]
RpLP1-PA, FBpp03... - The gene Ribosomal protein LP1 is referred to in FlyBase by the symbol Dmel\RpLP1 (CG4087, FBgn00025... gi\|194123351, gi... - gi\|195350097\|ref\|XP_002041578.1\| GM16740 [Drosophila sechellia], gi\|194123351\|gb\|EDW45394.1\| GM16740... gi\|194853475, gi... - gi\|194853475\|ref\|XP_001968169.1\| GG24717 [Drosophila erecta], gi\|190660036\|gb\|EDV57228.1\| GG24717 [D... gi\|195575543, gi... - gi\|195575543\|ref\|XP_002077637.1\| GD23023 [Drosophila simulans], gi\|194189646\|gb\|EDX03222.1\| GD23023 ...	115.0	[0..1]	[112..1]
gi\|60417196 - gi\|60417196\|emb\|CAH59398.1\| 60S acidic ribosomal protein P1 [Platichthys flesus]	114.0	[0..1]	[112..1]
gi\|109084446 - gi\|109084446\|ref\|XP_001095290.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 [Macaca mulat...	112.0	[0..2]	[112..137]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPQELACV YAALILQDDE VAITGDKIAT LLKAANIEFE PFWPGLFAKA LEGVDVKNLI  60
   61 TSVSSGASAG PAQAAAAAPA GGAPAAAAPA ESKEGRRSQG ESDDDMGFGL LD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.853872
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.563	N/A	N/A	a.287.1	Description not found.
View	Download	0.539	N/A	N/A	a.77.1	DEATH domain
View	Download	0.518	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.518	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.445	N/A	N/A	a.79.1	Antitermination factor NusB
View	Download	0.432	N/A	N/A	a.77.1	DEATH domain
View	Download	0.427	N/A	N/A	a.77.1	DEATH domain
View	Download	0.385	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.369	N/A	N/A	a.79.1	Antitermination factor NusB

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits