YRC Public Data Repository - Protein Structure Prediction

Protein:	PA2A8_DABPA
Organism:	Daboia palaestinae
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PA2A8_DABPA.

Description	E-value	Query Range	Subject Range
gi\|45934756, gi\|... - gi\|45934756\|gb\|AAS79430.1\| phospholipase A2 [Sistrurus catenatus tergeminus], gi\|166012678\|gb\|ABY779...	188.0	[0..1]	[137..1]
PA2AD_CROOA - Acidic phospholipase A2 CoaPLA2 OS=Crotalus oreganus abyssus PE=1 SV=1 PA2AD_CROVV - Acidic phospholipase A2 Cvv-E6d OS=Crotalus viridis viridis PE=1 SV=1	186.0	[0..1]	[137..1]
PA2A1_TRIGA - Acidic phospholipase A2 1 OS=Trimeresurus gramineus PE=1 SV=3	186.0	[0..1]	[137..1]
gi\|50874500 - gi\|50874500\|emb\|CAE47239.1\| ammodytin I2(C) variant [Vipera ammodytes meridionalis]	186.0	[0..1]	[137..1]
PA2B2_BOTJR - Basic phospholipase A2 bothropstoxin-2 OS=Bothrops jararacussu PE=1 SV=1	185.0	[0..1]	[137..1]
PA2N2_VIPAA - Neutral phospholipase A2 ammodytin I2 OS=Vipera ammodytes ammodytes PE=1 SV=2 gi\|50874406 - gi\|50874406\|emb\|CAE47192.1\| ammodytin I2(A) isoform [Vipera aspis zinnikeri] gi\|50874456, gi\|... - gi\|50874460\|emb\|CAE47219.1\| ammodytin I2(A) isoform [Vipera ammodytes ruffoi], gi\|50874456\|emb\|CAE47... gi\|6967298, gi\|5... - gi\|6967298\|emb\|CAA58840.1\| phospholipase a2 [Vipera ammodytes], gi\|5702036\|emb\|CAA40200.2\| phospholi... gi\|50874454, gi\|... - gi\|50874468\|emb\|CAE47223.1\| ammodytin I2(A) isoform [Vipera aspis aspis], gi\|50874454\|emb\|CAE47216.1... gi\|33187124 - gi\|33187124\|gb\|AAN59984.1\| ammodytin I2 [Vipera aspis] gi\|33187126, gi\|... - gi\|50874462\|emb\|CAE47220.1\| ammodytin I2(A) isoform [Vipera berus berus], gi\|50874418\|emb\|CAE47198.1...	185.0	[0..1]	[137..1]
gi\|50874436 - gi\|50874436\|emb\|CAE47207.1\| ammodytin I2(A) variant [Vipera aspis aspis]	185.0	[0..1]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILWIVAVC LIGVEGNLYQ FGKMIFKMTR KSALSYSDYG CYCGWGGKGK PQDATDRCCF  60
   61 VHDCCYGTVN GCDPKLSTYS YSFQNGDIVC GGDDPCLRAV CECDRVAAIC FGENMNTYDT 120
  121 KYMLHSLFDC MEESEKC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.30103
Match:	1vapA
Description:	Snake phospholipase A2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits