YRC Public Data Repository - Protein Structure Prediction

Protein:	CH101_BRADU
Organism:	Bradyrhizobium japonicum USDA 110
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CH101_BRADU.

Description	E-value	Query Range	Subject Range
gi\|27353501, gi\|... - gi\|27380337\|ref\|NP_771866.1\| co-chaperonin GroES [Bradyrhizobium japonicum USDA 110], gi\|27353501\|db...	149.0	[0..1]	[104..3]
gi\|78695632, gi\|... - gi\|78695632\|ref\|ZP_00860143.1\| heat shock protein [Bradyrhizobium sp. BTAi1], gi\|78516195\|gb\|EAP2949...	145.0	[0..1]	[104..3]
CH102_RHILO - 10 kDa chaperonin 2 OS=Rhizobium loti (strain MAFF303099) GN=groS2 PE=3 SV=1 CH12_RHILO, CH10... - (Q98II0) 10 kDa chaperonin 2 (Protein Cpn10 2) (groES protein 2), 10 kDa chaperonin 2 OS=Rhizobium l...	143.0	[0..1]	[104..1]
gi\|227818821, gi... - gi\|36959079\|gb\|AAQ87504.1\| 10 kDa chaperonin GroES [Rhizobium sp. NGR234], gi\|227818821\|ref\|YP_00282...	142.0	[0..1]	[104..1]
gi\|75676300, gi\|... - gi\|75676300\|ref\|YP_318721.1\| co-chaperonin GroES [Nitrobacter winogradskyi Nb-255], gi\|74421170\|gb\|A...	142.0	[0..1]	[104..1]
gi\|167364615, gi... - gi\|192290842\|ref\|YP_001991447.1\| chaperonin Cpn10 [Rhodopseudomonas palustris TIE-1], gi\|192284591\|g... CH102_RHOPA, CH1... - (P60367) 10 kDa chaperonin 2 (Protein Cpn10 2) (groES protein 2), 10 kDa chaperonin 2 OS=Rhodopseudo... groES2 - groES2 chaperonin GroES2, cpn10 2439028:2439342 reverse MW:11164	142.0	[0..1]	[104..1]
gi\|154248185, gi... - gi\|89358037\|ref\|ZP_01195859.1\| heat shock protein groES [Xanthobacter autotrophicus Py2], gi\|8935221...	142.0	[0..1]	[104..1]
gi\|86361059, gi\|... - gi\|86361059\|ref\|YP_472946.1\| 10 kDa chaperonin, heat shock protein [Rhizobium etli CFN 42], gi\|86285...	141.0	[0..1]	[104..1]
gi\|115524295, gi... - gi\|77743581\|ref\|ZP_00812041.1\| Chaperonin Cpn10 [Rhodopseudomonas palustris BisA53], gi\|77696544\|gb\|...	141.0	[0..1]	[104..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFRPLHDRV LVRRIDAEEK TAGGIIIPDT AKEKPQEGEI IAAGSGGRNE QGQLIPIDVK  60
   61 PGDRVLFGKW SGTEVKIDGQ DYLIMKESDL LGVVDKTGSV KKAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1wnrA
Description:	Crystal structure of the Cpn10 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits