YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50904189, gi\|...
Organism:	Streptococcus pyogenes MGAS10394
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50904189, gi|....

Description	E-value	Query Range	Subject Range
gi\|71911585, gi\|... - gi\|71911585\|ref\|YP_283135.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS5005], gi\|71... gi\|15675841, gi\|... - gi\|15675841\|ref\|NP_270015.1\| glutamate formiminotransferase [Streptococcus pyogenes M1 GAS], gi\|1362... GLFT_STRP1 - Glutamate formimidoyltransferase OS=Streptococcus pyogenes serotype M1 GN=M5005_Spy1772 PE=1 SV=1	513.0	[0..1]	[299..1]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKIVECIPN FSEGQNQAVI DGLVATAKSI PGVTLLDYSS DASHNRSVFT LVGDDQSIQE  60
   61 AAFQLVKYAS ENIDMTKHHG EHPRMGATDV CPFVPIKDIT TQECVEISKQ VAERINRELG 120
  121 IPIFLYEDSA TRPERQNLAK VRKGQFEGMP EKLLEEDWAP DYGDRKIHPT AGVTAVGARM 180
  181 PLVAFNVNLD TDNIDIAHKI AKIIRGSGGG YKYCKAIGVM LEDRHIAQVS MNMVNFEKCS 240
  241 LYRTFETIKF EARRYGVNVI GSEVIGLAPA KALIDVAEYY LQVEDFDYNK QILENHLLG

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Detection Method:	PSI-BLAST
Confidence:	136.0
Match:	1tt9A
Description:	Structure of the bifunctional and Golgi associated formiminotransferase cyclodeaminase octamer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits