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View Structure Prediction Details

Protein: DPO3_STRP6
Organism: Streptococcus pyogenes MGAS10394
Length: 1465 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPO3_STRP6.

Description E-value Query
Range
Subject
Range
gi|209560099, gi... - gi|209560099|ref|YP_002286571.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131], gi...
gi|56808719 - gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Stre...
1413.0 [0..1] [1465..1]

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Predicted Domain #1
Region A:
Residues: [1-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLFAKLMD QIEMPLDMRR SSAFSSADII EVKVHSVSRL WEFHFAFAAV LPIATYRELH  60
   61 DRLIRTFEAA DIKVTFDIQA AQVDYSDDLL QAYYQEAFEH APCNSASFKS SFSKLKVTYE 120
  121 DDKLIIAAPG FVNNDHFRNN HLPNLVKQFE AFGFGTLTID MVSDQEMTEH LTKNFVSSRQ 180
  181 ALVEKAVQDN LEAQKSLEAM MPPVEEATPA PKFDYKERAA KRQAGFEKAT ITPMIEIETE 240
  241 ENRIVFEGMV FDVERKTTRT GRHIINFKMT DYTSSFALQK WA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [283-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDDEELRKFD MIAKGAWLRV QGNIETNPFT KSLTMNVQQV KEIVHHERKD LMPEGQKRVE  60
   61 FHAHTNMSTM DALPTVESLI DMAAKWGHKA VAITDHANVQ SFPHGYHRAR KAGIKAIFGL 120
  121 EANIVEDKVP ISYD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.25
Match: 2anuA
Description: Crystal structure of Predicted metal-dependent phosphoesterase (PHP family) (tm0559) from THERMOTOGA MARITIMA at 2.40 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [417-527]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVDMDLHEAT YVVFDVETTG LSAMNNDLIQ IAASKMFKGN IVEQFDEFID PGHPLSAFTT  60
   61 ELTGITDKHL QGAKPLVTVL KAFQDFCKDS ILVAHNASFD VGFMNANYER H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.30103
Match: 2p1jA
Description: No description for 2p1jA was found.

Predicted Domain #4
Region A:
Residues: [528-1465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLPKITQPVI DTLEFARNLY PEYKRHGLGP LTKRFQVSLD HHHMANYDAE ATGRLLFIFL  60
   61 KDAREKHGIK NLLQLNTDLV AEDSYKKARI KHATIYVQNQ VGLKNMFKLV SLSNIKYFEG 120
  121 IPRIPRTVLD AHREGLLLGT ACSDGEVFDA VLTKGIDAAV DLAKYYDFIE IMPPAIYQPL 180
  181 VVRELIKDQA GIEQVIRDLI EVGKRANKPV LATGNVHYLE PEEEIYREII VRSLGQGAMI 240
  241 NRTIGRGEGA QPAPLPKAHF RTTNEMLDEF AFLGKDLAYQ VVVENTQDFA DRIEEVEVVK 300
  301 GDLYTPYIDK AEETVAELTY QKAFEIYGNP LPDIIDLRIE KELTSILGNG FAVIYLASQM 360
  361 LVNRSNERGY LVGSRGSVGS SFVATMIGIT EVNPMPPHYV CPSCQHSEFI TDGSVGSGYD 420
  421 LPNKPCPKCG TPYQKDGQDI PFETFLGFDG DKVPDIDLNF SGDDQPSAHL DVRDIFGDEY 480
  481 AFRAGTVGTV AEKTAYGFVK GYERDYGKFY RDAEVERLAA GAAGVKRTTG QHPGGIVVIP 540
  541 NYMDVYDFTP VQYPADDVTA SWQTTHFNFH DIDENVLKLD ILGHDDPTMI RKLQDLSGID 600
  601 PITIPADDPG VMALFSGTEV LGVTPEQIGT PTGMLGIPEF GTNFVRGMVN ETHPTTFAEL 660
  661 LQLSGLSHGT DVWLGNAQDL IKEGIATLKT VIGCRDDIMV YLMHAGLEPK MAFTIMERVR 720
  721 KGLWLKISEE ERNGYIDAMR ENNVPDWYIE SCGKIKYMFP KAHAAAYVLM ALRVAYFKVH 780
  781 HPIMYYCAYF SIRAKAFELK TMSGGLDAVK ARMEDITIKR KNNEATNVEN DLFTTLEIVN 840
  841 EMLERGFKFG KLDLYKSDAI EFQIKGDTLI PPFIALEGLG ENVAKQIVKA RQEGEFLSKM 900
  901 ELRKRGGASS TLVEKMDEMS ILGNMPEDNQ LSLFDDFF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2hnhA
Description: No description for 2hnhA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle