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View Structure Prediction Details

Protein: RL1_PROAC
Organism: Propionibacterium acnes KPA171202
Length: 232 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL1_PROAC.

Description E-value Query
Range
Subject
Range
gi|48835066 - ref|ZP_00292068.1| COG0081: Ribosomal protein L1 [Thermobifida fusca]
RL1_THEFY - 50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1
305.0 [0..1] [231..1]

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Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRSKAYRAA AEKVNLDQLY SPEEALALVA SGASAKFDET VDVAIRLGVD PKKADQMVRG  60
   61 TVNLPHGTGK TTRVLVFATG EKAEAAREAG ADEVGDDDLI AKVQGGYLDF DSVVATPDMM 120
  121 GKVGRLGRVL GPRGLMPNPK TGTVTMDVAK AVSDIKGGKI EFRTDRYANL HFLIGKVSFG 180
  181 SEKLAENYFA ALDEILRLKP NAAKGRYLRK ITVSSTMGPG VQIDPVAARD AD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.221849
Match: 1giyC
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.98821526471491 bayes_pls_golite062009
structural molecule activity 9.4110731269774 bayes_pls_golite062009
binding 1.37133122073906 bayes_pls_golite062009
protein binding 0.335149649581279 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle