YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50123335, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50123335, gi|....

Description	E-value	Query Range	Subject Range
gi\|75237636, gi\|... - gi\|75237636\|ref\|ZP_00721656.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|91213377, gi\|... - gi\|91213377\|ref\|YP_543363.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli UTI89... gi\|218692123, gi... - gi\|218692123\|ref\|YP_002400335.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli E... gi\|226903035, gi... - gi\|237702864\|ref\|ZP_04533345.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia sp. 3_2...	161.0	[0..3]	[202..6]
gi\|238913081 - gi\|238913081\|ref\|ZP_04656918.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica... gi\|62129949, gi\|... - gi\|62182316\|ref\|YP_218733.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica su... gi\|168464842, gi... - gi\|195632463\|gb\|EDX50947.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica sub... gi\|167992421, gi... - gi\|205329421\|gb\|EDZ16185.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica sub...	161.0	[0..1]	[205..1]
gi\|227888557, gi... - gi\|227888557\|ref\|ZP_04006362.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli 83... gi\|26111027, gi\|... - gi\|26250596\|ref\|NP_756636.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli CFT07...	160.0	[0..3]	[202..6]
gi\|194438600, gi... - gi\|83585910\|ref\|ZP_00924549.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|253326574, gi... - gi\|254290538\|ref\|YP_003056286.1\| hypothetical protein ECD_03722 [Escherichia coli BL21(DE3)], gi\|253... gi\|251787101, gi... - gi\|251787101\|ref\|YP_003001405.1\| hypothetical protein B21_03671 [Escherichia coli BL21], gi\|24237937... gi\|253975689, gi... - gi\|254163788\|ref\|YP_003046896.1\| putative conserved hypothetical protein [Escherichia coli B str. RE...	159.0	[0..3]	[202..6]
gi\|110644175, gi... - gi\|110644175\|ref\|YP_671905.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli 536]...	159.0	[0..3]	[202..6]
gi\|188496465, gi... - gi\|75514244\|ref\|ZP_00736552.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... EG11716 - 2-oxo-3-deoxygalactonate 6-phosphate aldolase / 2-oxo-3-deoxygalactonate 6-phosphate aldolase gi\|89110320, gi\|... - gi\|89110320\|ref\|AP_004100.1\| 2-oxo-3-deoxygalactonate 6-phosphate aldolase [Escherichia coli str. K-... gi\|124529040, gi... - gi\|124529040\|ref\|ZP_01700186.1\| KDPG and KHG aldolase [Escherichia coli B], gi\|124500179\|gb\|EAY47656... gi\|194425473, gi... - gi\|83588441\|ref\|ZP_00927065.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... DGOA_ECOLI - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC 4.1.2.21) (6-phospho-2-dehydro-3-deoxygalactonat... gi\|157163172, gi... - gi\|75197591\|ref\|ZP_00707661.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|170018071, gi... - gi\|170018071\|ref\|YP_001723025.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli A... gi\|170083196, gi... - gi\|170083196\|ref\|YP_001732516.1\| 2-oxo-3-deoxygalactonate 6-phosphate aldolase [Escherichia coli str... gi\|238902783, gi... - gi\|238902783\|ref\|YP_002928579.1\| 2-oxo-3-deoxygalactonate 6-phosphate aldolase [Escherichia coli BW2... gi\|253771445, gi... - gi\|254290394\|ref\|YP_003056142.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli B... gi\|242379232, gi... - gi\|251786959\|ref\|YP_003001263.1\| hypothetical protein B21_03520 [Escherichia coli BL21], gi\|24237923... gi\|253975545, gi... - gi\|254163644\|ref\|YP_003046752.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli B... EG11716 - 2-oxo-3-deoxygalactonate 6-phosphate aldolase / 2-oxo-3-deoxygalactonate 6-phosphate aldolase	158.0	[0..1]	[205..1]
gi\|193063847, gi... - gi\|75258233\|ref\|ZP_00729681.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|75236417, gi\|... - gi\|75236417\|ref\|ZP_00720513.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|218363027, gi... - gi\|218556258\|ref\|YP_002389172.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli I... gi\|191165833, gi... - gi\|75231037\|ref\|ZP_00717472.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|194413831, gi... - gi\|75210695\|ref\|ZP_00710836.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|157156056, gi... - gi\|75188450\|ref\|ZP_00701717.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli...	157.0	[0..1]	[205..1]
gi\|83571492 - gi\|83571492\|ref\|ZP_00922932.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Shigella dysente...	155.0	[0..1]	[194..1]
gi\|40063562 - gi\|40063562\|gb\|AAR38351.1\| KDPG and KHG aldolase family/SMP-30 family protein [uncultured marine bac...	149.0	[0..5]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWNTNLPLI AILRGITPDE VLEHIAALLD AGFDAVEIPL NSPNPYESIQ LAVEHFGDRA  60
   61 LIGAGTVLKA EYVDKLQEIG SKLVVTPNIS PEVIRRAVGY GMTVCPGCAT ATEAFTALDA 120
  121 GAQSLKIFPS SAFGPDYIKA LKAVLPKDVP VFAVGGVTPE NLKDYLSAGC IGAGLGSDLY 180
  181 RAGQSVEVTA QKAHAFVNAY KDAVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.154902
Match:	2v81A
Description:	No description for 2v81A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits