YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49613614, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49613614, gi|....

Description	E-value	Query Range	Subject Range
gi\|117626085, gi... - gi\|117626085\|ref\|YP_859408.1\| putative sugar phosphatase [Escherichia coli APEC O1], gi\|115515209\|gb...	208.0	[0..1]	[265..40]
gi\|15804418, gi\|... - gi\|15804418\|ref\|NP_290458.1\| putative sugar phosphatase [Escherichia coli O157:H7 EDL933], gi\|125187... gi\|25325555, gi\|... - gi\|25325555\|pir\|\|B86070 hypothetical protein Z5347 [imported] - Escherichia coli (strain O157:H7, s...	205.0	[0..1]	[265..40]
gi\|91213352, gi\|... - gi\|91213352\|ref\|YP_543338.1\| putative sugar phosphatase [Escherichia coli UTI89], gi\|91074926\|gb\|ABE...	204.0	[0..1]	[265..22]
gi\|170683030, gi... - gi\|170683030\|ref\|YP_001746144.1\| Cof family hydrolase [Escherichia coli SMS-3-5], gi\|170520748\|gb\|AC... gi\|110345743, gi... - gi\|110644151\|ref\|YP_671881.1\| putative sugar phosphatase [Escherichia coli 536], gi\|110345743\|gb\|ABG... gi\|190905782, gi... - gi\|75237658\|ref\|ZP_00721678.1\| COG0561: Predicted hydrolases of the HAD superfamily [Escherichia col...	203.0	[0..1]	[265..1]
gi\|75512618, gi\|... - gi\|75512618\|ref\|ZP_00735130.1\| COG0561: Predicted hydrolases of the HAD superfamily [Escherichia col... gi\|75230787, gi\|... - gi\|75230787\|ref\|ZP_00717250.1\| COG0561: Predicted hydrolases of the HAD superfamily [Escherichia col... gi\|218358489, gi... - gi\|218550948\|ref\|YP_002384739.1\| putative sugar phosphatase [Escherichia fergusonii ATCC 35469], gi\|... gi\|218697547, gi... - gi\|218697547\|ref\|YP_002405214.1\| putative sugar phosphatase [Escherichia coli 55989], gi\|218354279\|e... gi\|170022152, gi... - gi\|170022152\|ref\|YP_001727106.1\| putative sugar phosphatase [Escherichia coli ATCC 8739], gi\|1697570... gi\|124499203, gi... - gi\|124530437\|ref\|ZP_01701095.1\| Cof-like hydrolase [Escherichia coli B], gi\|124499203\|gb\|EAY46696.1\|... gi\|218434556, gi... - gi\|218707459\|ref\|YP_002414978.1\| putative sugar phosphatase [Escherichia coli UMN026], gi\|218434556\|...	203.0	[0..1]	[265..1]
gi\|218367658, gi... - gi\|218560889\|ref\|YP_002393802.1\| putative sugar phosphatase [Escherichia coli S88], gi\|218367658\|emb... gi\|170769871, gi... - gi\|170769871\|ref\|ZP_02904324.1\| hydrolase, Cof family [Escherichia albertii TW07627], gi\|170121309\|g... gi\|253979828, gi... - gi\|254290521\|ref\|YP_003056269.1\| predicted hydrolase [Escherichia coli BL21(DE3)], gi\|253979828\|gb\|A... gi\|242379358, gi... - gi\|251787085\|ref\|YP_003001389.1\| hypothetical protein B21_03654 [Escherichia coli BL21], gi\|24237935... gi\|254163771, gi... - gi\|254163771\|ref\|YP_003046879.1\| predicted hydrolase [Escherichia coli B str. REL606], gi\|253975672\|... gi\|194422419, gi... - gi\|83585927\|ref\|ZP_00924566.1\| COG0561: Predicted hydrolases of the HAD superfamily [Escherichia col... gi\|218371467, gi... - gi\|218701481\|ref\|YP_002409110.1\| putative sugar phosphatase [Escherichia coli IAI39], gi\|218371467\|e...	203.0	[0..1]	[265..1]
gi\|26250567, gi\|... - gi\|26250567\|ref\|NP_756607.1\| putative sugar phosphatase [Escherichia coli CFT073], gi\|26110997\|gb\|AA...	203.0	[0..1]	[265..22]
gi\|110807482, gi... - gi\|110807482\|ref\|YP_691002.1\| putative sugar phosphatase [Shigella flexneri 5 str. 8401], gi\|1106170...	203.0	[0..1]	[265..22]
gi\|46916887, gi\|... - gi\|54303457\|ref\|YP_133450.1\| hypothetical protein PBPRB1791 [Photobacterium profundum SS9], gi\|46916...	203.0	[0..1]	[265..1]
gi\|82778993, gi\|... - gi\|82778993\|ref\|YP_405342.1\| putative sugar phosphatase [Shigella dysenteriae Sd197], gi\|81243141\|gb...	202.0	[0..1]	[265..1]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYHVVASDLD GTLLSPDHSL SPYAKETLRL LTDKGIHFVF ATGRHHMDVA QIRDNLGISA  60
   61 FMITSNGARV HNSQGELIFS HNLDQDIARD LYSVVHTNPD MLTHVYRDDE WFMNRPRAEE 120
  121 ERFFKESIFK YKLFEPALLE TDGVSKVFFT CDSHEQLLPL EEAINARWGD RVNVSFSTLT 180
  181 CLEVMAGGVS KGHALEQVAK IIGFSLKECV AFGDGMNDYE MLSMAGKGCV MENAHQRLKD 240
  241 LLPDREVIGS NADSAVPNYL RELFLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.154902
Match:	1rkqA
Description:	Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
hydrolase activity	0.82377518695623	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: