YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50122986, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50122986, gi|....

Description	E-value	Query Range	Subject Range
gi\|77385339, gi\|... - gi\|77461336\|ref\|YP_350843.1\| anthranilate synthase component II [Pseudomonas fluorescens Pf0-1], gi\|...	225.0	[0..1]	[190..1]
gi\|110647998, gi... - gi\|110834887\|ref\|YP_693746.1\| anthranilate synthase, component II [Alcanivorax borkumensis SK2], gi\|...	224.0	[0..2]	[191..3]
gi\|90580849, gi\|... - gi\|90580849\|ref\|ZP_01236651.1\| para-aminobenzoate synthase component II [Vibrio angustum S14], gi\|90...	223.0	[0..1]	[190..1]
gi\|89049039, gi\|... - gi\|89075217\|ref\|ZP_01161648.1\| para-aminobenzoate synthase component II [Photobacterium sp. SKA34], ...	222.0	[0..1]	[190..1]
gi\|197938528, gi... - gi\|198244012\|ref\|YP_002217430.1\| aminodeoxychorismate synthase, component II [Salmonella enterica su... gi\|197265499, gi... - gi\|197265499\|ref\|ZP_03165573.1\| aminodeoxychorismate synthase, component II [Salmonella enterica sub... gi\|197247694, gi... - gi\|197247694\|ref\|YP_002148388.1\| aminodeoxychorismate synthase, component II [Salmonella enterica su... PABA_SALTY - Aminodeoxychorismate synthase component 2 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... gi\|167994569, gi... - gi\|205327603\|gb\|EDZ14367.1\| aminodeoxychorismate synthase, component II [Salmonella enterica subsp. ... PABA_SALTY - Para-aminobenzoate synthase glutamine amidotransferase component II OS=Salmonella typhimurium GN=pab... gi\|207858710, gi... - gi\|207858710\|ref\|YP_002245361.1\| para-aminobenzoate synthase component II [Salmonella enterica subsp... lcl\|NC_016856.1_... - [gene=pabA] [protein=para-aminobenzoate synthase component II] [protein_id=YP_005239662.1] [location... PABA_SALTY - Para-aminobenzoate synthase glutamine amidotransferase component II OS=Salmonella typhimurium GN=pab...	222.0	[0..1]	[190..1]
gi\|70732911, gi\|... - gi\|70732911\|ref\|YP_262682.1\| anthranilate synthase component II [Pseudomonas fluorescens Pf-5], gi\|6...	222.0	[0..1]	[190..1]
gi\|86165170, gi\|... - gi\|87119694\|ref\|ZP_01075591.1\| glutamine amidotransferase of anthranilate synthase orpara-aminobenzo...	222.0	[0..1]	[190..1]
gi\|95108707 - gi\|95108707\|emb\|CAK13401.1\| anthranilate synthase component II (Glutamine amido-transferase) [Pseudo... gi\|95108707, gi\|... - gi\|95108707\|emb\|CAK13401.1\| anthranilate synthase component II (Glutamine amido-transferase) [Pseudo...	221.0	[0..1]	[190..1]
gi\|238788940, gi... - gi\|77975021\|ref\|ZP_00830558.1\| COG0512: Anthranilate/para-aminobenzoate synthases component II [Yers...	221.0	[0..1]	[190..1]
gi\|204322280, gi... - gi\|204928847\|ref\|ZP_03220046.1\| aminodeoxychorismate synthase, component II [Salmonella enterica sub... gi\|213053379 - gi\|213053379\|ref\|ZP_03346257.1\| para-aminobenzoate synthase component II [Salmonella enterica subsp.... gi\|238913593 - gi\|238913593\|ref\|ZP_04657430.1\| para-aminobenzoate synthase component II [Salmonella enterica subsp.... gi\|213426760 - gi\|213426760\|ref\|ZP_03359510.1\| para-aminobenzoate synthase component II [Salmonella enterica subsp.... gi\|213581580 - gi\|213581580\|ref\|ZP_03363406.1\| para-aminobenzoate synthase component II [Salmonella enterica subsp.... gi\|205333159, gi... - gi\|205333159\|gb\|EDZ19923.1\| aminodeoxychorismate synthase, component II [Salmonella enterica subsp. ... gi\|197291379, gi... - gi\|197291379\|gb\|EDY30731.1\| aminodeoxychorismate synthase, component II [Salmonella enterica subsp. ... gi\|194455231, gi... - gi\|194468867\|ref\|ZP_03074851.1\| aminodeoxychorismate synthase, component II [Salmonella enterica sub... gi\|194737562, gi... - gi\|194737562\|ref\|YP_002116412.1\| aminodeoxychorismate synthase, component II [Salmonella enterica su... gi\|16505122, gi\|... - gi\|25291375\|pir\|\|AD1002 para-aminobenzoate synthase, glutamine amidotransferase component II (EC 4.1... gi\|29139940, gi\|... - gi\|29144303\|ref\|NP_807645.1\| para-aminobenzoate synthase component II [Salmonella enterica subsp. en... gi\|16762816 - gi\|16762816\|ref\|NP_458433.1\| para-aminobenzoate synthase component II [Salmonella enterica subsp. en... gi\|213864793 - gi\|213864793\|ref\|ZP_03386912.1\| para-aminobenzoate synthase component II [Salmonella enterica subsp.... gi\|213976486 - gi\|213976486\|ref\|ZP_03403745.1\| para-aminobenzoate synthase component II [Salmonella enterica subsp.... gi\|214000206 - gi\|214000206\|ref\|ZP_03410941.1\| para-aminobenzoate synthase component II [Salmonella enterica subsp....	221.0	[0..1]	[190..1]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLIIDNYDS FTYNLYQYFC ELGAQVVVKR NDELTLREIE LLAPERLVIS PGPCTPDEAG  60
   61 ISLAVIRHFA DKLPILGVCL GHQTMGQAFG ARVVRARQVM HGKTSAIAHS DTGVFTGLAQ 120
  121 PLTVTRYHSL IIDSASLPDC FEVTAWSEYE GQRDEIMGIR HRSLPLEGVQ FHPESILSQQ 180
  181 GHQLLDNFLK I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	1qdlB
Description:	Anthranilate synthase GAT subunit, TrpG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-amino-4-deoxychorismate synthase activity	4.48164623771604	bayes_pls_golite062009
anthranilate synthase activity	2.51214170411838	bayes_pls_golite062009
ligase activity	1.77692713123297	bayes_pls_golite062009
oxo-acid-lyase activity	1.35896725827905	bayes_pls_golite062009
catalytic activity	1.30391542469987	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.628648036096965	bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity	0.270391651600004	bayes_pls_golite062009
carbon-carbon lyase activity	0.0769356405014503	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: