YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49613244, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49613244, gi|....

Description	E-value	Query Range	Subject Range
gi\|152968936, gi... - gi\|152968936\|ref\|YP_001334045.1\| nucleoside channel; receptor of phage T6 and colicin K [Klebsiella ... TSX_KLEPN - Nucleoside-specific channel-forming protein tsx OS=Klebsiella pneumoniae GN=tsx PE=3 SV=1	342.0	[0..5]	[290..1]
lcl\|NC_016856.1_... - [gene=tsx] [protein=nucleoside channel] [protein_id=YP_005236104.1] [location=complement(468230..469... gi\|62179024, gi\|... - gi\|62179024\|ref\|YP_215441.1\| nucleoside channel; receptor of phage T6 and colicin K [Salmonella ente...	326.0	[0..3]	[290..34]
gi\|237707595, gi... - gi\|237707595\|ref\|ZP_04538076.1\| nucleoside-specific channel-forming protein tsx [Escherichia sp. 3_2... gi\|91071053, gi\|... - gi\|91209479\|ref\|YP_539465.1\| nucleoside channel; receptor of phage T6 and colicin K [Escherichia col... gi\|26106814, gi\|... - gi\|26246416\|ref\|NP_752455.1\| nucleoside-specific channel-forming protein tsx precursor [Escherichia ...	326.0	[0..3]	[290..15]
gi\|15800140, gi\|... - gi\|15800140\|ref\|NP_286152.1\| nucleoside channel; receptor of phage T6 and colicin K [Escherichia col... gi\|25348404 - gi\|25348404\|pir\|\|D85537 hypothetical protein tsx [imported] - Escherichia coli (strain O157:H7, sub...	325.0	[0..5]	[290..1]
gi\|89107281, gi\|... - gi\|89107281\|ref\|AP_001061.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia col... gi\|56383200, gi\|... - gi\|56479649\|ref\|NP_706299.2\| outer membrane protein Tsx [Shigella flexneri 2a str. 301], gi\|56383200... gi\|188487522, gi... - gi\|75512472\|ref\|ZP_00735011.1\| COG3248: Nucleoside-binding outer membrane protein [Escherichia coli ... TSX_SHIFL - Nucleoside-specific channel-forming protein tsx OS=Shigella flexneri GN=tsx PE=3 SV=1 gi\|81239832, gi\|... - gi\|82775684\|ref\|YP_402031.1\| nucleoside channel [Shigella dysenteriae Sd197], gi\|81239832\|gb\|ABB6054... gi\|30061906, gi\|... - gi\|30061906\|ref\|NP_836077.1\| outer membrane protein Tsx [Shigella flexneri 2a str. 2457T], gi\|300401... TSX_ECO57 - Nucleoside-specific channel-forming protein tsx OS=Escherichia coli O157:H7 GN=tsx PE=3 SV=1 EG11035 - nucleoside channel, receptor of phage T6 and colicin K / Outer membrane channel for nucleosides; rec... gi\|75189478, gi\|... - gi\|75189478\|ref\|ZP_00702745.1\| COG3248: Nucleoside-binding outer membrane protein [Escherichia coli ... TSX_ECOLI - Nucleoside-specific channel-forming protein tsx precursor - Escherichia coli gi\|75194630, gi\|... - gi\|75194630\|ref\|ZP_00704700.1\| COG3248: Nucleoside-binding outer membrane protein [Escherichia coli ... gi\|83585670, gi\|... - gi\|83585670\|ref\|ZP_00924312.1\| COG3248: Nucleoside-binding outer membrane protein [Escherichia coli ... gi\|75237208, gi\|... - gi\|75237208\|ref\|ZP_00721255.1\| COG3248: Nucleoside-binding outer membrane protein [Escherichia coli ... gi\|188015880, gi... - gi\|188015880\|gb\|EDU54002.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O157:H... gi\|193065192, gi... - gi\|75256783\|ref\|ZP_00728388.1\| COG3248: Nucleoside-binding outer membrane protein [Escherichia coli ... gi\|75209967, gi\|... - gi\|75209967\|ref\|ZP_00710156.1\| COG3248: Nucleoside-binding outer membrane protein [Escherichia coli ... gi\|189368014, gi... - gi\|189368014\|gb\|EDU86430.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O157:H... gi\|75230136, gi\|... - gi\|75230136\|ref\|ZP_00716640.1\| COG3248: Nucleoside-binding outer membrane protein [Escherichia coli ... gi\|189355995, gi... - gi\|189355995\|gb\|EDU74414.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O157:H... gi\|208806647, gi... - gi\|208806647\|ref\|ZP_03248984.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O1... gi\|13359921, gi\|... - gi\|15829718\|ref\|NP_308491.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O157:... gi\|195938524 - gi\|195938524\|ref\|ZP_03083906.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia ... gi\|110613981, gi... - gi\|110804433\|ref\|YP_687953.1\| outer membrane protein Tsx [Shigella flexneri 5 str. 8401], gi\|1106139... gi\|208823093, gi... - gi\|208823093\|ref\|ZP_03263411.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O1... gi\|208815572, gi... - gi\|208815572\|ref\|ZP_03256751.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O1... gi\|209917624, gi... - gi\|209917624\|ref\|YP_002291708.1\| nucleoside channel protein [Escherichia coli SE11], gi\|209910883\|db... gi\|209398558, gi... - gi\|209398558\|ref\|YP_002269055.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O... gi\|217326235, gi... - gi\|217326235\|ref\|ZP_03442319.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O1... gi\|215485492, gi... - gi\|215485492\|ref\|YP_002327923.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia... gi\|187768263, gi... - gi\|187768263\|gb\|EDU32107.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O157:H... gi\|189362419, gi... - gi\|189362419\|gb\|EDU80838.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O157:H... gi\|189373689, gi... - gi\|189373689\|gb\|EDU92105.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O157:H... gi\|124500215, gi... - gi\|124528878\|ref\|ZP_01700063.1\| nucleoside-specific channel-forming protein, Tsx [Escherichia coli B... gi\|168783274, gi... - gi\|188999376\|gb\|EDU68362.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O157:H... gi\|169756145, gi... - gi\|170021217\|ref\|YP_001726171.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli A... gi\|168800291, gi... - gi\|189377436\|gb\|EDU95852.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli O157:H... gi\|170680575, gi... - gi\|170680575\|ref\|YP_001742548.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli S... gi\|169887832, gi... - gi\|170079997\|ref\|YP_001729317.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia... EG11035 - nucleoside channel, receptor of phage T6 and colicin K / Outer membrane channel for nucleosides; rec... gi\|218693872, gi... - gi\|218693872\|ref\|YP_002401539.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia... gi\|238899699, gi... - gi\|238899699\|ref\|YP_002925495.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia... gi\|218552974, gi... - gi\|218552974\|ref\|YP_002385887.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia... gi\|242376189, gi... - gi\|251783916\|ref\|YP_002998220.1\| hypothetical protein B21_00363 [Escherichia coli BL21], gi\|24237618... gi\|218703693, gi... - gi\|218703693\|ref\|YP_002411212.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia... gi\|253774604, gi... - gi\|254287281\|ref\|YP_003053029.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia... gi\|218368668, gi... - gi\|218698682\|ref\|YP_002406311.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia... gi\|254791594, gi... - gi\|254791594\|ref\|YP_003076431.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia...	325.0	[0..5]	[290..1]
gi\|194419115, gi... - gi\|83570321\|ref\|ZP_00921766.1\| COG3248: Nucleoside-binding outer membrane protein [Shigella dysenter...	325.0	[0..5]	[290..1]
gi\|74310980, gi\|... - gi\|74310980\|ref\|YP_309399.1\| nucleoside channel [Shigella sonnei Ss046], gi\|73854457\|gb\|AAZ87164.1\| ...	323.0	[0..5]	[290..1]
gi\|191173474, gi... - gi\|75238738\|ref\|ZP_00722726.1\| COG3248: Nucleoside-binding outer membrane protein [Escherichia coli ... gi\|110640672, gi... - gi\|110640672\|ref\|YP_668400.1\| nucleoside-specific channel-forming protein tsx precursor [Escherichia... gi\|227884581, gi... - gi\|227884581\|ref\|ZP_04002386.1\| nucleoside-specific channel-forming protein tsx precursor [Escherich... gi\|117622672, gi... - gi\|117622672\|ref\|YP_851585.1\| nucleoside-specific channel-forming protein Tsx [Escherichia coli APEC... gi\|218364089, gi... - gi\|218557320\|ref\|YP_002390233.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia... gi\|218425838, gi... - gi\|218688274\|ref\|YP_002396486.1\| nucleoside channel, receptor of phage T6 and colicin K [Escherichia...	323.0	[0..5]	[290..1]
gi\|187733170, gi... - gi\|75176885\|ref\|ZP_00697001.1\| COG3248: Nucleoside-binding outer membrane protein [Shigella boydii B... gi\|81244310, gi\|... - gi\|82542899\|ref\|YP_406846.1\| Tsx [Shigella boydii Sb227], gi\|81244310\|gb\|ABB65018.1\| Tsx [Shigella b...	322.0	[0..5]	[290..1]
TSX_SALTI - Nucleoside-specific channel-forming protein tsx OS=Salmonella typhi GN=tsx PE=3 SV=1 TSX_SALTI - Nucleoside-specific channel-forming protein tsx OS=Salmonella typhi GN=tsx PE=3 SV=1 gi\|16759391 - gi\|16759391\|ref\|NP_455008.1\| nucleoside-specific channel-forming protein tsx precursor [Salmonella e... TSX_SALTY - Nucleoside-specific channel-forming protein tsx OS=Salmonella typhimurium (strain LT2 / SGSC1412 / A... gi\|29138470, gi\|... - gi\|29142838\|ref\|NP_806180.1\| nucleoside-specific channel-forming protein tsx precursor [Salmonella e... gi\|167551777, gi... - gi\|205323407\|gb\|EDZ11246.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica sub... gi\|205329540, gi... - gi\|205329540\|gb\|EDZ16304.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica sub... gi\|205333507, gi... - gi\|205333507\|gb\|EDZ20271.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica sub... gi\|168237525, gi... - gi\|197289575\|gb\|EDY28938.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica sub... gi\|161615400, gi... - gi\|161615400\|ref\|YP_001589365.1\| hypothetical protein SPAB_03171 [Salmonella enterica subsp. enteric... gi\|204927299, gi... - gi\|204927299\|ref\|ZP_03218501.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica... gi\|205271505, gi... - gi\|205351724\|ref\|YP_002225525.1\| nucleoside-specific channel-forming protein tsx precursor [Salmonel... gi\|207855894, gi... - gi\|207855894\|ref\|YP_002242545.1\| nucleoside-specific channel-forming protein tsx precursor [Salmonel... gi\|213163221 - gi\|213163221\|ref\|ZP_03348931.1\| nucleoside channel; receptor of phage T6 and colicin K [Salmonella e... gi\|197250407, gi... - gi\|197250407\|ref\|YP_002145394.1\| nucleoside-specific channel-forming protein tsx [Salmonella enteric... gi\|197240706, gi... - gi\|197262451\|ref\|ZP_03162525.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica... gi\|238911454 - gi\|238911454\|ref\|ZP_04655291.1\| nucleoside channel; receptor of phage T6 and colicin K [Salmonella e... gi\|198241974, gi... - gi\|198241974\|ref\|YP_002214366.1\| nucleoside-specific channel-forming protein tsx [Salmonella enteric... gi\|200391102, gi... - gi\|200391102\|ref\|ZP_03217713.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica... gi\|194444768, gi... - gi\|194444768\|ref\|YP_002039654.1\| nucleoside-specific channel-forming protein tsx [Salmonella enteric... gi\|194450064, gi... - gi\|194450064\|ref\|YP_002044446.1\| nucleoside-specific channel-forming protein tsx [Salmonella enteric... gi\|194472591, gi... - gi\|194472591\|ref\|ZP_03078575.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica... gi\|194738167, gi... - gi\|194738167\|ref\|YP_002113444.1\| nucleoside-specific channel-forming protein tsx [Salmonella enteric... TSX_SALTY - Nucleoside-specific channel-forming protein tsx OS=Salmonella typhimurium GN=tsx PE=4 SV=1 gi\|168240235, gi... - gi\|205340181\|gb\|EDZ26945.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica sub... gi\|205350059, gi... - gi\|205350059\|gb\|EDZ36690.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica sub... gi\|168465502, gi... - gi\|195631785\|gb\|EDX50305.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica sub... gi\|168818977, gi... - gi\|205344067\|gb\|EDZ30831.1\| nucleoside-specific channel-forming protein tsx [Salmonella enterica sub... gi\|213427847 - gi\|213427847\|ref\|ZP_03360597.1\| nucleoside channel; receptor of phage T6 and colicin K [Salmonella e... gi\|213610138 - gi\|213610138\|ref\|ZP_03369964.1\| nucleoside channel; receptor of phage T6 and colicin K [Salmonella e... TSX_SALTY - Nucleoside-specific channel-forming protein tsx OS=Salmonella typhimurium GN=tsx PE=4 SV=1 gi\|213650165 - gi\|213650165\|ref\|ZP_03380218.1\| nucleoside channel; receptor of phage T6 and colicin K [Salmonella e... gi\|214000370 - gi\|214000370\|ref\|ZP_03411105.1\| nucleoside channel; receptor of phage T6 and colicin K [Salmonella e...	321.0	[0..24]	[290..22]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNMKKTFA AGALLALSCS MPALADDNKA EYLSDWWHQS INVVGSAHTR FGPQLSSTTY  60
   61 LEYEAFARKD WFDFYGYADV PKFFGGDPDS RGIWDKGSPL FVEIEPRFSI DKLTGADLSF 120
  121 GPFKEWYIAN NVIYDQGRNS GSRQSTWYMG LGTDIDTGTD LSLSLNGYAK YQWQNYGAAN 180
  181 ENEWDGYRVK VKYSYPLGSL MGGNVSYISF TNFDFGSELR DKSNSSRTNN SIASSHILAL 240
  241 GYDHWHYSFV ARYFHNGGQW ADGAELNFGK GPFEVKSTGW GYYLVVGYNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.69897
Match:	1tlwA
Description:	Tsx structure complexed with thymidine
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside transmembrane transporter activity	10.4297934011355	bayes_pls_golite062009
nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity	5.73088734190731	bayes_pls_golite062009
transporter activity	2.55928656852707	bayes_pls_golite062009
transmembrane transporter activity	2.44072409024655	bayes_pls_golite062009
substrate-specific transporter activity	2.14215782778459	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.06465400776497	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: