YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50122643, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50122643, gi|....

Description	E-value	Query Range	Subject Range
gi\|75512140, gi\|... - gi\|75512140\|ref\|ZP_00734712.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli 53638], gi\|18...	184.0	[0..2]	[149..5]
gi\|16502707, gi\|... - gi\|25512946\|pir\|\|AG0686 probable bacteriophage protein STY1618 [imported] - Salmonella enterica subs... gi\|16760412 - gi\|16760412\|ref\|NP_456029.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ser...	184.0	[0..2]	[149..5]
gi\|213855899 - gi\|213855899\|ref\|ZP_03384139.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213610157 - gi\|213610157\|ref\|ZP_03369983.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213648562 - gi\|213648562\|ref\|ZP_03378615.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213427422 - gi\|213427422\|ref\|ZP_03360172.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213581732 - gi\|213581732\|ref\|ZP_03363558.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213024650 - gi\|213024650\|ref\|ZP_03339097.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|29137452, gi\|... - gi\|29141824\|ref\|NP_805166.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ser...	184.0	[0..2]	[149..5]
gi\|75255744, gi\|... - gi\|75255744\|ref\|ZP_00727505.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli E22], gi\|1930... gi\|218370285, gi... - gi\|218700299\|ref\|YP_002407928.1\| Putative phage virion morphogenesis (putative tail completion) prot... gi\|75228565, gi\|... - gi\|75228565\|ref\|ZP_00715199.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli B7A], gi\|1911...	184.0	[0..2]	[149..5]
gi\|85058816, gi\|... - gi\|85058816\|ref\|YP_454518.1\| hypothetical protein SG0838 [Sodalis glossinidius str. 'morsitans'], gi...	181.0	[0..2]	[149..5]
gi\|36786747, gi\|... - gi\|37527313\|ref\|NP_930657.1\| hypothetical protein plu3439 [Photorhabdus luminescens subsp. laumondii...	179.0	[0..1]	[149..1]
gi\|34497592, gi\|... - gi\|34497592\|ref\|NP_901807.1\| hypothetical protein CV_2137 [Chromobacterium violaceum ATCC 12472], gi...	165.0	[0..4]	[147..5]
gi\|33147940, gi\|... - gi\|33151719\|ref\|NP_873072.1\| mu-like bacteriophage G protein 2 [Haemophilus ducreyi 35000HP], gi\|331...	160.0	[0..4]	[144..2]
VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 /... VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae GN=HI_1568 PE=4 SV=1	157.0	[0..4]	[140..2]
gi\|44829504, gi\|... - gi\|48696941\|ref\|YP_024704.1\| gp31 [Burkholderia phage BcepMu], gi\|44829504\|gb\|AAS47871.1\| gp31 [Burk... gi\|197295368, gi... - gi\|197295368\|ref\|YP_002153909.1\| putative phage Mu G virion morphogenesis protein [Burkholderia ceno...	151.0	[0..4]	[149..5]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVSITIND SDLRRGLRAL ESAAADMIPA MRKIAGTLHA ETDINFDESG RPEWIVSQAA  60
   61 EDRYGQTLRK TGRLQGSVST EYDSSTAMIG TNTIYGAIHQ FGGKTGRNES VELPARPYLP 120
  121 MDEDGNLQSE AVNSVLDTIQ RHLESAAQR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.065502
Match:	PF05069.4
Description:	No description for PF05069.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.451	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.422	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.305	N/A	N/A	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.299	N/A	N/A	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.276	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.272	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.228	N/A	N/A	d.110.2	GAF domain-like
View	Download	0.221	N/A	N/A	b.81.1	Trimeric LpxA-like enzymes
View	Download	0.219	N/A	N/A	a.79.1	Antitermination factor NusB

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits