YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49613135, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49613135, gi|....

Description	E-value	Query Range	Subject Range
gi\|37199911, gi\|... - gi\|37681160\|ref\|NP_935769.1\| hypothetical protein VV2976 [Vibrio vulnificus YJ016], gi\|37199911\|dbj\|...	215.0	[0..1]	[139..1]
gi\|27364789, gi\|... - gi\|27364789\|ref\|NP_760317.1\| hypothetical protein VV1_1395 [Vibrio vulnificus CMCP6], gi\|27360934\|gb...	214.0	[0..1]	[139..1]
gi\|75854365, gi\|... - gi\|75854365\|ref\|ZP_00762063.1\| COG0432: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|1161...	210.0	[0..1]	[139..1]
gi\|91227269, gi\|... - gi\|91227269\|ref\|ZP_01261694.1\| hypothetical protein V12G01_14670 [Vibrio alginolyticus 12G01], gi\|91...	210.0	[0..1]	[139..1]
gi\|121590960, gi... - gi\|121590960\|ref\|ZP_01678280.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215471... gi\|124114175, gi... - gi\|153216664\|ref\|ZP_01950571.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124114175\|... gi\|124117582, gi... - gi\|153224533\|ref\|ZP_01954491.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241175... gi\|116187944, gi... - gi\|75828930\|ref\|ZP_00758258.1\| COG0432: Uncharacterized conserved protein [Vibrio cholerae MO10], gi... gi\|153803240, gi... - gi\|153803240\|ref\|ZP_01957826.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121220... gi\|229354374, gi... - gi\|229508606\|ref\|ZP_04398102.1\| hypothetical protein VCE_000014 [Vibrio cholerae B33], gi\|229354374\|... gi\|153830462, gi... - gi\|153830462\|ref\|ZP_01983129.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887406... gi\|229606346, gi... - gi\|229606346\|ref\|YP_002876994.1\| hypothetical protein VCD_001251 [Vibrio cholerae MJ-1236], gi\|22936... gi\|9654791, gi\|1... - gi\|9654791\|gb\|AAF93546.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|229346921, gi... - gi\|229516018\|ref\|ZP_04405469.1\| hypothetical protein VCC_000033 [Vibrio cholerae RC9], gi\|229346921\|... gi\|11278573 - pir\|\|A82330 conserved hypothetical protein VC0373 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|229504956, gi... - gi\|229504956\|ref\|ZP_04394467.1\| hypothetical protein VCF_000164 [Vibrio cholerae BX 330286], gi\|2293... gi\|227008473, gi... - gi\|227080585\|ref\|YP_002809136.1\| hypothetical protein VCM66_0357 [Vibrio cholerae M66-2], gi\|2270084...	207.0	[0..1]	[139..1]
gi\|86142773, gi\|... - gi\|86142773\|ref\|ZP_01061212.1\| hypothetical protein MED217_07656 [Flavobacterium sp. MED217], gi\|858... gi\|86142773, gi\|... - gi\|86142773\|ref\|ZP_01061212.1\| hypothetical protein MED217_07656 [Flavobacterium sp. MED217], gi\|858...	207.0	[0..3]	[139..4]
gi\|75817959, gi\|... - gi\|75817959\|ref\|ZP_00748203.1\| COG0432: Uncharacterized conserved protein [Vibrio cholerae V51], gi\|... gi\|227116779, gi... - gi\|75828355\|ref\|ZP_00757790.1\| COG0432: Uncharacterized conserved protein [Vibrio cholerae O395], gi... gi\|121628531, gi... - gi\|75814267\|ref\|ZP_00744881.1\| COG0432: Uncharacterized conserved protein [Vibrio cholerae V52], gi\|...	207.0	[0..1]	[139..1]
tr\|D7HHZ0\|D7HHZ0... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_04069 PE=4 SV=1 gi\|116215658, gi... - gi\|75822389\|ref\|ZP_00752025.1\| COG0432: Uncharacterized conserved protein [Vibrio cholerae RC385], g...	206.0	[0..1]	[139..1]
gi\|87120833, gi\|... - gi\|87120833\|ref\|ZP_01076726.1\| hypothetical protein MED121_18870 [Marinomonas sp. MED121], gi\|861640...	206.0	[0..1]	[139..1]
gi\|28807742, gi\|... - gi\|28899506\|ref\|NP_799111.1\| hypothetical protein VP2732 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28807742 - gi\|28807742\|dbj\|BAC60995.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	205.0	[0..1]	[139..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTQYEIRLK PKARGFHLVT DEILAQVVAL RQIKVGLMHV FIKHTSAALT INENADPTVR  60
   61 QDFESFFNRL VPEDEPYYRH TYEGSDDMPA HLKGSLLGNS LTIPITNGRL NIGTWQGIYL 120
  121 CEHRNHGGSR SLVVTLNGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.154902
Match:	1vmjA
Description:	Crystal structure of hypothetical protein (TM0723) from Thermotoga maritima at 1.52 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits