YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49613122, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49613122, gi|....

Description	E-value	Query Range	Subject Range
gi\|51588695, gi\|... - gi\|51595413\|ref\|YP_069604.1\| hypothetical protein YPTB1066 [Yersinia pseudotuberculosis IP 32953], g... gi\|186894440, gi... - gi\|186894440\|ref\|YP_001871552.1\| hypothetical protein YPTS_1119 [Yersinia pseudotuberculosis PB1/+],... Q66DI0\|Q66DI0_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis	403.0	[0..1]	[286..1]
gi\|37525177, gi\|... - gi\|37525177\|ref\|NP_928521.1\| hypothetical protein plu1209 [Photorhabdus luminescens subsp. laumondii...	356.0	[0..2]	[285..54]
gi\|152961936, gi... - gi\|77629870\|ref\|ZP_00792456.1\| hypothetical protein YpseI_01001217 [Yersinia pseudotuberculosis IP 3...	307.0	[0..11]	[279..1]
gi\|167468951 - gi\|167468951\|ref\|ZP_02333655.1\| hypothetical protein YpesF_13904 [Yersinia pestis FV-1] gi\|21957892, gi\|... - gi\|22125043\|ref\|NP_668466.1\| hypothetical protein y1139 [Yersinia pestis KIM], gi\|21957892\|gb\|AAM847... gi\|25510894 - pir\|\|AB0340 hypothetical protein YPO2788 [imported] - Yersinia pestis (strain CO92) gi\|16122989, gi\|... - gi\|218929857\|ref\|YP_002347732.1\| hypothetical protein YPO2788 [Yersinia pestis CO92], gi\|16122989\|re... gi\|229895905, gi... - gi\|229895905\|ref\|ZP_04511075.1\| hypothetical protein YPS_3708 [Yersinia pestis Pestoides A], gi\|2297... gi\|45435833, gi\|... - gi\|45440974\|ref\|NP_992513.1\| hypothetical protein YP_1145 [Yersinia pestis biovar Microtus str. 9100... gi\|229838360, gi... - gi\|229838360\|ref\|ZP_04458519.1\| hypothetical protein YPH_0594 [Yersinia pestis biovar Orientalis str... gi\|229898927, gi... - gi\|229898927\|ref\|ZP_04514071.1\| hypothetical protein YPF_3370 [Yersinia pestis biovar Orientalis str... gi\|229901450, gi... - gi\|229901450\|ref\|ZP_04516572.1\| hypothetical protein YP516_1142 [Yersinia pestis Nepal516], gi\|22968... gi\|108780439, gi... - gi\|108808526\|ref\|YP_652442.1\| hypothetical protein YPA_2533 [Yersinia pestis Antiqua], gi\|108780439\|... gi\|149365259, gi... - gi\|149365259\|ref\|ZP_01887294.1\| hypothetical protein YPE_0409 [Yersinia pestis CA88-4125], gi\|149291... gi\|145599945, gi... - gi\|145599945\|ref\|YP_001164021.1\| hypothetical protein YPDSF_2682 [Yersinia pestis Pestoides F], gi\|1...	287.0	[0..1]	[191..1]
gi\|229687951, gi... - gi\|229899006\|ref\|ZP_04514150.1\| hypothetical protein YPF_3453 [Yersinia pestis biovar Orientalis str... gi\|229838439, gi... - gi\|229838439\|ref\|ZP_04458598.1\| hypothetical protein YPH_0676 [Yersinia pestis biovar Orientalis str... gi\|21958141, gi\|... - gi\|22125269\|ref\|NP_668692.1\| hypothetical protein y1370 [Yersinia pestis KIM], gi\|21958141\|gb\|AAM849...	278.0	[0..55]	[277..13]
gi\|108775085, gi... - gi\|108811437\|ref\|YP_647204.1\| membrane protein [Yersinia pestis Nepal516], gi\|108775085\|gb\|ABG17604.... gi\|108808297, gi... - gi\|108808297\|ref\|YP_652213.1\| hypothetical protein YPA_2303 [Yersinia pestis Antiqua], gi\|108780210\|... gi\|145211181, gi... - gi\|145599485\|ref\|YP_001163561.1\| membrane protein [Yersinia pestis Pestoides F], gi\|145211181\|gb\|ABP...	278.0	[0..55]	[277..6]
gi\|45437366, gi\|... - gi\|45442501\|ref\|NP_994040.1\| hypothetical protein YP_2729 [Yersinia pestis biovar Microtus str. 9100...	226.0	[0..114]	[277..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYDPVLKTL VDDDYRLEDH LDFKKQHADI NYQKLHAQLN EINNDNIHAI LTAQEATYFL  60
   61 QTLCTPNPNQ SWKTAMFGCT DPVSSFAGNI AEAVSVSRIV MEIKGFGVTA TEYVGKNGSK 120
  121 YIKLSGYPGV RKYLDATRYL VSNQKILDIG IGTKGIESGI AAGARFCILF SGAYRAIELM 180
  181 LK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEYALTDFFV NLTMDAAKLA ISIGVAWGAK AAATSVMVAT GGSVIIIAGG IFLLGVAVSF  60
   61 SLLWLDNKYK ISETIIKNLK SHKKQYTPYH PDQFFHAWGR YSRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits