YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49612797, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49612797, gi|....

Description	E-value	Query Range	Subject Range
gi\|28210085, gi\|... - gi\|28210085\|ref\|NP_781029.1\| SSU ribosomal protein S30P [Clostridium tetani E88], gi\|28202521\|gb\|AAO...	133.0	[0..1]	[113..1]
gi\|42784341, gi\|... - gi\|42784341\|ref\|NP_981588.1\| ribosomal subunit interface protein [Bacillus cereus ATCC 10987], gi\|42... gi\|228584165, gi... - gi\|229199305\|ref\|ZP_04325972.1\| Ribosome-associated factor Y [Bacillus cereus m1293], gi\|228584165\|g... gi\|228823307, gi... - gi\|228936475\|ref\|ZP_04099273.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar andalou... gi\|206976850, gi... - gi\|206976850\|ref\|ZP_03237753.1\| ribosomal subunit interface protein [Bacillus cereus H3081.97], gi\|2... gi\|49481144, gi\|... - gi\|49481144\|ref\|YP_039178.1\| ribosomal subunit interface protein [Bacillus thuringiensis serovar kon...	130.0	[0..1]	[110..1]
gi\|228911022, gi... - gi\|228911022\|ref\|ZP_04074830.1\| Ribosome-associated factor Y [Bacillus thuringiensis IBL 200], gi\|22... gi\|228903662, gi... - gi\|228903662\|ref\|ZP_04067782.1\| Ribosome-associated factor Y [Bacillus thuringiensis IBL 4222], gi\|2... gi\|228791463, gi... - gi\|228968290\|ref\|ZP_04129288.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar sotto s... gi\|218543998, gi... - gi\|218900308\|ref\|YP_002448719.1\| ribosomal subunit interface protein [Bacillus cereus G9842], gi\|218... gi\|75759029, gi\|... - gi\|75759029\|ref\|ZP_00739137.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar israelen...	129.0	[0..1]	[110..1]
gi\|89201187, gi\|... - gi\|89201187\|ref\|ZP_01179933.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Bacillus cereus ...	128.0	[0..1]	[110..1]
gi\|196039551, gi... - gi\|196039551\|ref\|ZP_03106856.1\| ribosomal subunit interface protein [Bacillus cereus NVH0597-99], gi... gi\|254755618 - gi\|254755618\|ref\|ZP_05207651.1\| ribosomal subunit interface protein [Bacillus anthracis str. Vollum] gi\|196045660, gi... - gi\|196045660\|ref\|ZP_03112890.1\| ribosomal subunit interface protein [Bacillus cereus 03BB108], gi\|19... gi\|254744320 - gi\|254744320\|ref\|ZP_05202000.1\| ribosomal subunit interface protein [Bacillus anthracis str. Kruger ... gi\|49188025, gi\|... - gi\|49188025\|ref\|YP_031278.1\| ribosomal subunit interface protein [Bacillus anthracis str. Sterne], g... gi\|218538065, gi... - gi\|218906364\|ref\|YP_002454198.1\| ribosomal subunit interface protein [Bacillus cereus AH820], gi\|218... gi\|254735592 - gi\|254735592\|ref\|ZP_05193299.1\| ribosomal subunit interface protein [Bacillus anthracis str. Western... gi\|52140376, gi\|... - gi\|52140376\|ref\|YP_086454.1\| ribosomal subunit interface protein [Bacillus cereus E33L], gi\|51973845... gi\|254686387 - gi\|254686387\|ref\|ZP_05150246.1\| ribosomal subunit interface protein [Bacillus anthracis str. CNEVA-9... gi\|30259891, gi\|... - gi\|30265214\|ref\|NP_847591.1\| ribosomal subunit interface protein [Bacillus anthracis str. Ames], gi\|... gi\|229600659, gi... - gi\|229600659\|ref\|YP_002869408.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0248]... gi\|47530736, gi\|... - gi\|47530736\|ref\|YP_022085.1\| ribosomal subunit interface protein [Bacillus anthracis str. 'Ames Ance... gi\|229187399, gi... - gi\|229187399\|ref\|ZP_04314542.1\| Ribosome-associated factor Y [Bacillus cereus BGSC 6E1], gi\|22859610... gi\|228607592, gi... - gi\|229175859\|ref\|ZP_04303357.1\| Ribosome-associated factor Y [Bacillus cereus MM3], gi\|228607592\|gb\|... gi\|21397652, gi\|... - gi\|65317161\|ref\|ZP_00390120.1\| COG1544: Ribosome-associated protein Y (PSrp-1) [Bacillus anthracis s... gi\|229124695, gi... - gi\|229124695\|ref\|ZP_04253876.1\| Ribosome-associated factor Y [Bacillus cereus 95/8201], gi\|228658790... gi\|164714285, gi... - gi\|165869962\|ref\|ZP_02214619.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0488],... gi\|229094283, gi... - gi\|229094283\|ref\|ZP_04225359.1\| Ribosome-associated factor Y [Bacillus cereus Rock3-42], gi\|22868913... gi\|167635298, gi... - gi\|167635298\|ref\|ZP_02393613.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0442],... gi\|228981891, gi... - gi\|228981891\|ref\|ZP_04142186.1\| Ribosome-associated factor Y [Bacillus thuringiensis Bt407], gi\|2287... gi\|167640491, gi... - gi\|167640491\|ref\|ZP_02398754.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0193],... gi\|228975253, gi... - gi\|228975253\|ref\|ZP_04135811.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar thuring... gi\|170687990, gi... - gi\|170687990\|ref\|ZP_02879203.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0465],... gi\|228948907, gi... - gi\|228948907\|ref\|ZP_04111180.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar monterr... gi\|170707806, gi... - gi\|170707806\|ref\|ZP_02898257.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0389],... gi\|228942324, gi... - gi\|228942324\|ref\|ZP_04104863.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar berline... gi\|172081770, gi... - gi\|177652995\|ref\|ZP_02935322.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0174],... gi\|228917792, gi... - gi\|228917792\|ref\|ZP_04081331.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar pulsien... gi\|190567823, gi... - gi\|190567823\|ref\|ZP_03020735.1\| ribosomal subunit interface protein [Bacillus anthracis Tsiankovskii... gi\|227004908, gi... - gi\|227817948\|ref\|YP_002817957.1\| ribosomal subunit interface protein [Bacillus anthracis str. CDC 68... gi\|195994277, gi... - gi\|196032848\|ref\|ZP_03100261.1\| ribosomal subunit interface protein [Bacillus cereus W], gi\|19599427... gi\|225790392, gi... - gi\|225867152\|ref\|YP_002752530.1\| ribosomal subunit interface protein [Bacillus cereus 03BB102], gi\|2... gi\|118419452, gi... - gi\|118480227\|ref\|YP_897378.1\| sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus thu... gi\|254757073 - gi\|254757073\|ref\|ZP_05209101.1\| ribosomal subunit interface protein [Bacillus anthracis str. Austral...	128.0	[0..1]	[110..1]
gi\|228771268, gi... - gi\|228988412\|ref\|ZP_04148503.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar tochigi... gi\|217962670, gi... - gi\|217962670\|ref\|YP_002341244.1\| ribosomal subunit interface protein [Bacillus cereus AH187], gi\|217... gi\|229158753, gi... - gi\|229158753\|ref\|ZP_04286811.1\| Ribosome-associated factor Y [Bacillus cereus ATCC 4342], gi\|2286247... gi\|222098642, gi... - gi\|222098642\|ref\|YP_002532700.1\| ribosomal subunit interface protein [Bacillus cereus Q1], gi\|221242... gi\|228641531, gi... - gi\|229141916\|ref\|ZP_04270442.1\| Ribosome-associated factor Y [Bacillus cereus BDRD-ST26], gi\|2286415... gi\|47569295, gi\|... - gi\|47569295\|ref\|ZP_00239980.1\| ribosomal subunit interface protein [Bacillus cereus G9241], gi\|47568...	128.0	[0..1]	[110..1]
gi\|228722505, gi... - gi\|229050849\|ref\|ZP_04194401.1\| Ribosome-associated factor Y [Bacillus cereus AH676], gi\|228722505\|g... gi\|228961425, gi... - gi\|228961425\|ref\|ZP_04123038.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar pakista... gi\|228923913, gi... - gi\|228923913\|ref\|ZP_04087190.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar huazhon... gi\|229153343, gi... - gi\|229153343\|ref\|ZP_04281521.1\| Ribosome-associated factor Y [Bacillus cereus m1550], gi\|228629947\|g... gi\|229147718, gi... - gi\|229147718\|ref\|ZP_04276061.1\| Ribosome-associated factor Y [Bacillus cereus BDRD-ST24], gi\|2286357... gi\|30023223, gi\|... - gi\|30023223\|ref\|NP_834854.1\| sigma (54) modulation protein / SSU ribosomal protein S30P [Bacillus ce... gi\|228653029, gi... - gi\|229130434\|ref\|ZP_04259391.1\| Ribosome-associated factor Y [Bacillus cereus BDRD-Cer4], gi\|2286530... gi\|229112596, gi... - gi\|229112596\|ref\|ZP_04242133.1\| Ribosome-associated factor Y [Bacillus cereus Rock1-15], gi\|22867097... gi\|218234476, gi... - gi\|218234476\|ref\|YP_002369963.1\| ribosomal subunit interface protein [Bacillus cereus B4264], gi\|218...	128.0	[0..1]	[100..1]
gi\|163865071, gi... - gi\|89205055\|ref\|ZP_01183628.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Bacillus weihens... gi\|229014357, gi... - gi\|229014357\|ref\|ZP_04171476.1\| Ribosome-associated factor Y [Bacillus mycoides DSM 2048], gi\|228746...	127.0	[0..1]	[110..1]
gi\|168801715, gi... - gi\|189376172\|gb\|EDU94588.1\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. EC508... gi\|169890036, gi... - gi\|170082201\|ref\|YP_001731521.1\| cold shock protein associated with 30S ribosomal subunit [Escherich... gi\|170682385, gi... - gi\|170682385\|ref\|YP_001744781.1\| ribosomal subunit interface protein [Escherichia coli SMS-3-5], gi\|... gi\|192954987, gi... - gi\|193071692\|ref\|ZP_03052593.1\| ribosomal subunit interface protein [Escherichia coli E110019], gi\|1... gi\|194411782, gi... - gi\|194430157\|ref\|ZP_03062658.1\| ribosomal subunit interface protein [Escherichia coli B171], gi\|1944... gi\|194435113, gi... - gi\|194435113\|ref\|ZP_03067349.1\| ribosomal subunit interface protein [Shigella dysenteriae 1012], gi\|... gi\|194439324, gi... - gi\|194439324\|ref\|ZP_03071402.1\| ribosomal subunit interface protein [Escherichia coli 101-1], gi\|194... gi\|189405287, gi... - gi\|189405287\|ref\|ZP_02814507.2\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. E... gi\|191169066, gi... - gi\|191169066\|ref\|ZP_03030829.1\| ribosomal subunit interface protein [Escherichia coli B7A], gi\|19090... gi\|191174568, gi... - gi\|191174568\|ref\|ZP_03036063.1\| ribosomal subunit interface protein [Escherichia coli F11], gi\|19090... gi\|192929290, gi... - gi\|193064055\|ref\|ZP_03045140.1\| ribosomal subunit interface protein [Escherichia coli E22], gi\|19292... gi\|189009941, gi... - gi\|189009941\|ref\|ZP_02803583.2\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. E... gi\|189402629, gi... - gi\|189402629\|ref\|ZP_02783674.2\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. E... gi\|189359596, gi... - gi\|189403634\|ref\|ZP_02796710.2\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. E... gi\|189404127, gi... - gi\|189404127\|ref\|ZP_02787397.2\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. E... gi\|170765892, gi... - gi\|170765892\|ref\|ZP_02900703.1\| ribosomal subunit interface protein [Escherichia albertii TW07627], ... gi\|187428966, gi... - gi\|187731974\|ref\|YP_001881387.1\| ribosomal subunit interface protein [Shigella boydii CDC 3083-94], ... gi\|187775817, gi... - gi\|187775817\|ref\|ZP_02798482.2\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. E... gi\|188025252, gi... - gi\|188025252\|ref\|ZP_02777084.2\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. E... RAIA_ECOLI - Ribosome-associated inhibitor A (Protein Y) (SpotY) (pY) - Escherichia coli gi\|157162072, gi... - gi\|157162072\|ref\|YP_001459390.1\| translation inhibitor protein RaiA [Escherichia coli HS], gi\|157067... gi\|226839298, gi... - gi\|254037674\|ref\|ZP_04871732.1\| RaiA [Escherichia sp. 1_1_43], gi\|226839298\|gb\|EEH71319.1\| RaiA [Esc... gi\|24113936, gi\|... - gi\|24113936\|ref\|NP_708446.1\| translation inhibitor protein RaiA [Shigella flexneri 2a str. 301], gi\|... gi\|157155544, gi... - gi\|157155544\|ref\|YP_001463917.1\| translation inhibitor protein RaiA [Escherichia coli E24377A], gi\|1... gi\|253974468, gi... - gi\|254162567\|ref\|YP_003045675.1\| cold shock protein associated with 30S ribosomal subunit [Escherich... RAIA_ECOL6 - Ribosome-associated inhibitor A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ra... gi\|242378192, gi... - gi\|251785919\|ref\|YP_003000223.1\| hypothetical protein B21_02450 [Escherichia coli BL21], gi\|24237819... gi\|30042253, gi\|... - gi\|30063997\|ref\|NP_838168.1\| translation inhibitor protein RaiA [Shigella flexneri 2a str. 2457T], g... gi\|254289328, gi... - gi\|254289328\|ref\|YP_003055076.1\| cold shock protein associated with 30S ribosomal subunit [Escherich... RAIA_ECO57 - Ribosome-associated inhibitor A OS=Escherichia coli O157:H7 GN=raiA PE=3 SV=2 EG11151 - cold shock protein associated with 30S ribosomal subunit / Protein Y, associated with 30S ribosomal ... gi\|12517020, gi\|... - gi\|15803120\|ref\|NP_289151.1\| translation inhibitor protein RaiA [Escherichia coli O157:H7 EDL933], g... gi\|254593944, gi... - gi\|254794544\|ref\|YP_003079381.1\| cold shock protein associated with 30S ribosomal subunit [Escherich... gi\|1800000, gi\|8... - gi\|89109398\|ref\|AP_003178.1\| cold shock protein associated with 30S ribosomal subunit [Escherichia c... gi\|91211932, gi\|... - gi\|91211932\|ref\|YP_541918.1\| translation inhibitor protein RaiA [Escherichia coli UTI89], gi\|9107350... gi\|15832714, gi\|... - gi\|15832714\|ref\|NP_311487.1\| translation inhibitor protein RaiA [Escherichia coli O157:H7 str. Sakai... gi\|110344351, gi... - gi\|110642759\|ref\|YP_670489.1\| translation inhibitor protein RaiA [Escherichia coli 536], gi\|11034435... gi\|110616283, gi... - gi\|110806735\|ref\|YP_690255.1\| translation inhibitor protein RaiA [Shigella flexneri 5 str. 8401], gi... gi\|81242101, gi\|... - gi\|82777953\|ref\|YP_404302.1\| translation inhibitor protein RaiA [Shigella dysenteriae Sd197], gi\|812... gi\|82545053, gi\|... - gi\|82545053\|ref\|YP_409000.1\| translation inhibitor protein RaiA [Shigella boydii Sb227], gi\|81246464... gi\|74313181, gi\|... - gi\|74313181\|ref\|YP_311600.1\| translation inhibitor protein RaiA [Shigella sonnei Ss046], gi\|73856658... RAIA_SHIFL - Ribosome-associated inhibitor A OS=Shigella flexneri GN=raiA PE=3 SV=2 RAIA_ECOL6 - Ribosome-associated inhibitor A OS=Escherichia coli O6 GN=raiA PE=2 SV=2 EG11151 - cold shock protein associated with 30S ribosomal subunit / Protein Y, associated with 30S ribosomal ... gi\|226899854, gi... - gi\|237706814\|ref\|ZP_04537295.1\| translation inhibitor protein RaiA [Escherichia sp. 3_2_53FAA], gi\|2... gi\|238901757, gi... - gi\|238901757\|ref\|YP_002927553.1\| cold shock protein associated with 30S ribosomal subunit [Escherich... gi\|227888164, gi... - gi\|227888164\|ref\|ZP_04005969.1\| sigma 54 modulation protein/SE30A ribosomal protein [Escherichia col... gi\|218701109, gi... - gi\|218701109\|ref\|YP_002408738.1\| translation inhibitor protein RaiA [Escherichia coli IAI39], gi\|218... gi\|218555176, gi... - gi\|218555176\|ref\|YP_002388089.1\| translation inhibitor protein RaiA [Escherichia coli IAI1], gi\|2183... gi\|218559517, gi... - gi\|218559517\|ref\|YP_002392430.1\| translation inhibitor protein RaiA [Escherichia coli S88], gi\|21836... gi\|218690715, gi... - gi\|218690715\|ref\|YP_002398927.1\| translation inhibitor protein RaiA [Escherichia coli ED1a], gi\|2184... gi\|218352953, gi... - gi\|218696221\|ref\|YP_002403888.1\| translation inhibitor protein RaiA [Escherichia coli 55989], gi\|218... gi\|209161223, gi... - gi\|209399823\|ref\|YP_002272069.1\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. ... gi\|209920073, gi... - gi\|209920073\|ref\|YP_002294157.1\| translation inhibitor protein RaiA [Escherichia coli SE11], gi\|2099... gi\|215487935, gi... - gi\|215487935\|ref\|YP_002330366.1\| translation inhibitor protein RaiA [Escherichia coli O127:H6 str. E... gi\|217320148, gi... - gi\|217327781\|ref\|ZP_03443864.1\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. T... gi\|195940192 - gi\|195940192\|ref\|ZP_03085574.1\| translation inhibitor protein RaiA [Escherichia coli O157:H7 str. EC... gi\|208808023, gi... - gi\|208808023\|ref\|ZP_03250360.1\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. E... gi\|208813967, gi... - gi\|208813967\|ref\|ZP_03255296.1\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. E... gi\|208820801, gi... - gi\|208820801\|ref\|ZP_03261121.1\| ribosomal subunit interface protein [Escherichia coli O157:H7 str. E...	127.0	[0..1]	[113..1]
gi\|25498386 - pir\|\|D97250 ribosome-associated protein Y (PSrp-1) [imported] - Clostridium acetobutylicum gi\|15025892, gi\|... - gi\|15896102\|ref\|NP_349451.1\| ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum ATCC...	126.0	[0..1]	[113..1]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTINITSKQM DITPAIRQHV EDRLSKLDKW QTQLINPHII LSKEPQGFVA DATISTPNGP  60
   61 LVASAKHDDM YAAINELITK LERQLDKLQH KGEARRAVAG VKEANLQPTQ EEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1n3gA
Description:	Ribosome binding protein Y (YfiA homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.47304811799096	bayes_pls_golite062009
protein binding	0.411183424287687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: