YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49612502, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49612502, gi|....

Description	E-value	Query Range	Subject Range
gi\|238785197, gi... - gi\|77957377\|ref\|ZP_00821435.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|238718694, gi... - gi\|77960843\|ref\|ZP_00824698.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	163.0	[0..1]	[166..1]
gi\|77976972, gi\|... - gi\|77976972\|ref\|ZP_00832435.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	160.0	[0..1]	[166..1]
gi\|238710549, gi... - gi\|238751275\|ref\|ZP_04612769.1\| Colicin V production protein [Yersinia rohdei ATCC 43380], gi\|238710... gi\|77975506, gi\|... - gi\|77975506\|ref\|ZP_00831041.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	160.0	[0..1]	[166..1]
gi\|165992704, gi... - gi\|166008322\|ref\|ZP_02229220.1\| colicin V production protein [Yersinia pestis biovar Antiqua str. E1... gi\|165925155, gi... - gi\|165925155\|ref\|ZP_02220987.1\| colicin V production protein [Yersinia pestis biovar Orientalis str.... gi\|167398849, gi... - gi\|167398849\|ref\|ZP_02304373.1\| colicin V production protein [Yersinia pestis biovar Antiqua str. UG... gi\|166214249, gi... - gi\|166214249\|ref\|ZP_02240284.1\| colicin V production protein [Yersinia pestis biovar Antiqua str. B4... gi\|167424537, gi... - gi\|167424537\|ref\|ZP_02316290.1\| colicin V production protein [Yersinia pestis biovar Mediaevalis str... gi\|167421236, gi... - gi\|167421236\|ref\|ZP_02312989.1\| colicin V production protein [Yersinia pestis biovar Orientalis str.... gi\|169750309, gi... - gi\|170023775\|ref\|YP_001720280.1\| colicin V production protein [Yersinia pseudotuberculosis YPIII], g... gi\|167469034 - gi\|167469034\|ref\|ZP_02333738.1\| colicin V production protein [Yersinia pestis FV-1] gi\|165937015, gi... - gi\|89103389\|ref\|ZP_01175969.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|229694707, gi... - gi\|229838341\|ref\|ZP_04458500.1\| membrane protein required for colicin V production [Yersinia pestis ... gi\|77635317, gi\|... - gi\|77635317\|ref\|ZP_00797403.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|108808068, gi... - gi\|108808068\|ref\|YP_651984.1\| colicin V production protein [Yersinia pestis Antiqua], gi\|108779981\|g... gi\|229688455, gi... - gi\|229898907\|ref\|ZP_04514052.1\| membrane protein required for colicin V production [Yersinia pestis ... gi\|25299155 - pir\|\|AC0338 probable colicin V production protein cvpA [imported] - Yersinia pestis (strain CO92) gi\|153950398, gi... - gi\|77629661\|ref\|ZP_00792247.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|229902693, gi... - gi\|229902693\|ref\|ZP_04517810.1\| membrane protein required for colicin V production [Yersinia pestis ... gi\|45437046, gi\|... - gi\|45442182\|ref\|NP_993721.1\| colicin V production protein [Yersinia pestis biovar Microtus str. 9100... gi\|21958395, gi\|... - gi\|22125499\|ref\|NP_668922.1\| colicin V production protein [Yersinia pestis KIM], gi\|21958395\|gb\|AAM8... gi\|115348454, gi... - gi\|218929843\|ref\|YP_002347718.1\| colicin V production protein [Yersinia pestis CO92], gi\|16122975\|re... Q668X4\|Q668X4_YERPS - Putative colicin V production protein - Yersinia pseudotuberculosis gi\|51596932, gi\|... - gi\|51596932\|ref\|YP_071123.1\| colicin V production protein [Yersinia pseudotuberculosis IP 32953], gi... gi\|186896013, gi... - gi\|186896013\|ref\|YP_001873125.1\| colicin V production protein [Yersinia pseudotuberculosis PB1/+], g... gi\|149365245, gi... - gi\|149365245\|ref\|ZP_01887280.1\| putative colicin V production protein [Yersinia pestis CA88-4125], g... gi\|145210964, gi... - gi\|145599268\|ref\|YP_001163344.1\| colicin V production protein [Yersinia pestis Pestoides F], gi\|1452...	160.0	[0..1]	[166..1]
gi\|37527054, gi\|... - gi\|37527054\|ref\|NP_930398.1\| colicin V production protein [Photorhabdus luminescens subsp. laumondii...	158.0	[0..1]	[160..1]
gi\|85059592, gi\|... - gi\|85059592\|ref\|YP_455294.1\| colicin V production protein [Sodalis glossinidius str. 'morsitans'], g...	149.0	[0..1]	[162..1]
gi\|52307109, gi\|... - gi\|52425057\|ref\|YP_088194.1\| CvpA protein [Mannheimia succiniciproducens MBEL55E], gi\|52307109\|gb\|AA...	148.0	[0..19]	[163..17]
gi\|160863839, gi... - gi\|161502492\|ref\|YP_001569604.1\| colicin V production protein [Salmonella enterica subsp. arizonae s... gi\|197289698, gi... - gi\|197289698\|gb\|EDY29061.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|168229739, gi... - gi\|205335645\|gb\|EDZ22409.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|205328821, gi... - gi\|205328821\|gb\|EDZ15585.1\| CvpA protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|205325157, gi... - gi\|205325157\|gb\|EDZ12996.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|197936440, gi... - gi\|198241924\|ref\|YP_002216436.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Dublin st... gi\|62180935, gi\|... - gi\|62180935\|ref\|YP_217352.1\| colicin V production protein [Salmonella enterica subsp. enterica serov... gi\|197093150, gi... - gi\|197361674\|ref\|YP_002141310.1\| colicin V production protein [Salmonella enterica subsp. enterica s... gi\|56126997, gi\|... - gi\|56412740\|ref\|YP_149815.1\| colicin V production protein [Salmonella enterica subsp. enterica serov... gi\|197240260, gi... - gi\|197262005\|ref\|ZP_03162079.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197251329, gi... - gi\|197251329\|ref\|YP_002147324.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Agona str... gi\|206709584, gi... - gi\|207857781\|ref\|YP_002244432.1\| colicin V production protein [Salmonella enterica subsp. enterica s... gi\|205273257, gi... - gi\|205353476\|ref\|YP_002227277.1\| colicin V production protein [Salmonella enterica subsp. enterica s... gi\|204321643, gi... - gi\|204929099\|ref\|ZP_03220242.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Javiana st... gi\|199604101, gi... - gi\|200387003\|ref\|ZP_03213615.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Virchow st... gi\|25299156, gi\|... - gi\|25299156\|pir\|\|AI0801 colicin V production protein (DedE protein) [imported] - Salmonella enterica... gi\|205344810, gi... - gi\|205344810\|gb\|EDZ31574.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|16765690, gi\|... - gi\|16765690\|ref\|NP_461305.1\| colicin V production protein [Salmonella typhimurium LT2], gi\|16420906\|... gi\|168465926, gi... - gi\|195631401\|gb\|EDX49961.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|205349676, gi... - gi\|205349676\|gb\|EDZ36307.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|168242488, gi... - gi\|205338309\|gb\|EDZ25073.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|194737346, gi... - gi\|194737346\|ref\|YP_002115434.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|194457176, gi... - gi\|194470812\|ref\|ZP_03076796.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|29141016, gi\|... - gi\|29141016\|ref\|NP_804358.1\| colicin V production protein [Salmonella enterica subsp. enterica serov... gi\|194451460, gi... - gi\|194451460\|ref\|YP_002046419.1\| colicin V production protein [Salmonella enterica subsp. enterica s... gi\|16761288 - gi\|16761288\|ref\|NP_456905.1\| colicin V production protein [Salmonella enterica subsp. enterica serov... gi\|194445133, gi... - gi\|194445133\|ref\|YP_002041627.1\| CvpA protein [Salmonella enterica subsp. enterica serovar Newport s... gi\|213646796 - gi\|213646796\|ref\|ZP_03376849.1\| colicin V production protein [Salmonella enterica subsp. enterica se... gi\|213622849 - gi\|213622849\|ref\|ZP_03375632.1\| colicin V production protein [Salmonella enterica subsp. enterica se... gi\|213426982 - gi\|213426982\|ref\|ZP_03359732.1\| colicin V production protein [Salmonella enterica subsp. enterica se... gi\|238912358 - gi\|238912358\|ref\|ZP_04656195.1\| colicin V production protein [Salmonella enterica subsp. enterica se... gi\|213416735 - gi\|213416735\|ref\|ZP_03349879.1\| colicin V production protein [Salmonella enterica subsp. enterica se... gi\|224583148, gi... - gi\|224583148\|ref\|YP_002636946.1\| colicin V production protein [Salmonella enterica subsp. enterica s... gi\|214002035 - gi\|214002035\|ref\|ZP_03412770.1\| colicin V production protein [Salmonella enterica subsp. enterica se... gi\|213852684 - gi\|213852684\|ref\|ZP_03382216.1\| colicin V production protein [Salmonella enterica subsp. enterica se... gi\|113877066 - gi\|113877066\|gb\|ABI37070.1\| colicin V production protein [Salmonella enterica subsp. enterica serova...	148.0	[0..1]	[162..1]
gi\|28898960, gi\|... - gi\|28898960\|ref\|NP_798565.1\| bacteriocin production protein [Vibrio parahaemolyticus RIMD 2210633], ... gi\|28807179 - gi\|28807179\|dbj\|BAC60449.1\| bacteriocin production protein [Vibrio parahaemolyticus RIMD 2210633]	147.0	[0..1]	[163..1]
gi\|237704791, gi... - gi\|237704791\|ref\|ZP_04535272.1\| colicin V production protein [Escherichia sp. 3_2_53FAA], gi\|2269011... gi\|218365995, gi... - gi\|218559226\|ref\|YP_002392139.1\| colicin V production protein [Escherichia coli S88], gi\|218365995\|e... gi\|117624503, gi... - gi\|117624503\|ref\|YP_853416.1\| colicin V production protein [Escherichia coli APEC O1], gi\|115513627\|... gi\|91211609, gi\|... - gi\|91211609\|ref\|YP_541595.1\| colicin V production protein [Escherichia coli UTI89], gi\|91073183\|gb\|A...	146.0	[0..1]	[162..1]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWVDYVIIG IIGFSALVSL IRGFVREALS LVTWGCAFFV ASHYYAYLAV YFTRFDDELV  60
   61 RNGIAIAILF IATLIVGAIV NYVISSLVER TGLSGTDRVL GICFGALRGV LIVSALLFFL 120
  121 DTFTGFSQSD DWKQSQLIPQ FSYIIRWFFD YLQSTSSFLP QHLPLR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.207608
Match:	PF02674.7
Description:	No description for PF02674.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits