YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49612300, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49612300, gi|....

Description	E-value	Query Range	Subject Range
gi\|205327446, gi... - gi\|205358109\|ref\|ZP_03223930.1\| putative virulence-associated protein [Salmonella enterica subsp. en... lcl\|NC_016855.1_... - [gene=STM14_5624] [protein=MvpA-like protein] [protein_id=YP_005235629.1] [location=complement(86468... gi\|16445325, gi\|... - gi\|17233504\|ref\|NP_490590.1\| plasmid maintenance protein [Salmonella typhimurium LT2], gi\|16445325\|g...	154.0	[0..1]	[131..1]
tr\|A0A120MEU8\|A0... - Plasmid maintenance protein OS=Escherichia coli (strain K12) GN=C3026_24615 PE=4 SV=1 gi\|32470009, gi\|... - gi\|32470009\|ref\|NP_862949.1\| plasmid maintenance protein [Escherichia coli], gi\|28629266\|gb\|AAO49546... gi\|48527948 - gi\|48527948\|ref\|YP_024416.1\| plasmid maintenance protein [Plasmid F]	151.0	[0..1]	[131..1]
gi\|188501183, gi... - gi\|75512304\|ref\|ZP_00734866.1\| COG1487: Predicted nucleic acid-binding protein, contains PIN domain ... gi\|32307072 - gi\|32307072\|gb\|AAP79034.1\| MvpA [Shigella flexneri]	151.0	[0..1]	[131..1]
VAPC_SHIFL - tRNA(fMet)-specific endonuclease VapC OS=Shigella flexneri GN=vapC PE=1 SV=1 gi\|31983571, gi\|... - gi\|31983571\|ref\|NP_858378.1\| plasmid maintenance protein [Shigella flexneri 2a str. 301], gi\|1846256... gi\|13310744\|gb\|A... - plasmid maintenance protein [Shigella flexneri] gi\|31983571, gi\|... - gi\|31983571\|ref\|NP_858378.1\| plasmid maintenance protein [Shigella flexneri 2a str. 301], gi\|1846256...	151.0	[0..1]	[131..1]
gi\|95112800 - gi\|95112800\|emb\|CAK17528.1\| putative nucleic acid binding protein, PIN domain [Pseudomonas entomophi... gi\|95112800, gi\|... - gi\|95112800\|emb\|CAK17528.1\| putative nucleic acid binding protein, PIN domain [Pseudomonas entomophi...	150.0	[0..1]	[132..1]
tr\|Q888H9\|Q888H9... - Probable ribonuclease VapC OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=vapC PE=3 SV=1 gi\|28851499, gi\|... - gi\|28868262\|ref\|NP_790881.1\| virulence-associated protein, putative [Pseudomonas syringae pv. tomato...	149.0	[0..1]	[134..1]
gi\|75176631 - gi\|75176631\|ref\|ZP_00696764.1\| COG1487: Predicted nucleic acid-binding protein, contains PIN domain ...	148.0	[0..1]	[131..1]
gi\|56129237, gi\|... - gi\|56414980\|ref\|YP_152055.1\| plasmid maintenance protein [Salmonella enterica subsp. enterica serova... gi\|197363909, gi... - gi\|197363909\|ref\|YP_002143546.1\| plasmid maintenance protein [Salmonella enterica subsp. enterica se...	148.0	[0..1]	[131..1]
gi\|107099855 - gi\|107099855\|ref\|ZP_01363773.1\| hypothetical protein PaerPA_01000875 [Pseudomonas aeruginosa PACS2] gi\|37955758, gi\|... - gi\|37955758\|gb\|AAP22597.1\| putative nucleic acid binding protein [Pseudomonas aeruginosa], gi\|323643...	147.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYLLDTNI CIYTIKNKPQ EVRDAFYRHY GQFAISSITL MELIYGAEKS VNPEKNLAVI  60
   61 EGFSARMEVQ NYGFDAAVHT GQIRAELAKQ GTPIGPYDAM LAGHARSAGL ILVTNNVREF 120
  121 ERVPGLRVEN WVSRQADNSQ SL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	2h1cA
Description:	No description for 2h1cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits