YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50121264, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50121264, gi|....

Description	E-value	Query Range	Subject Range
gi\|190900917, gi... - gi\|191169035\|ref\|ZP_03030799.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190900917\|... gi\|193065781, gi... - gi\|193065781\|ref\|ZP_03046844.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192926553\|... gi\|24051783, gi\|... - gi\|24112845\|ref\|NP_707355.1\| hypothetical protein SF1465 [Shigella flexneri 2a str. 301], gi\|2405178... gi\|30041226, gi\|... - gi\|30062977\|ref\|NP_837148.1\| hypothetical protein S1580 [Shigella flexneri 2a str. 2457T], gi\|300412... gi\|187732833, gi... - gi\|187732833\|ref\|YP_001880556.1\| hypothetical protein SbBS512_E2012 [Shigella boydii CDC 3083-94], g... gi\|110614982, gi... - gi\|110805434\|ref\|YP_688954.1\| hypothetical protein SFV_1458 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|81245248, gi\|... - gi\|82543837\|ref\|YP_407784.1\| hypothetical protein SBO_1329 [Shigella boydii Sb227], gi\|81245248\|gb\|A... gi\|194418267, gi... - gi\|194433504\|ref\|ZP_03065782.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|209912381, gi... - gi\|209919122\|ref\|YP_002293206.1\| hypothetical protein ECSE_1931 [Escherichia coli SE11], gi\|20991238... gi\|193068947, gi... - gi\|193068947\|ref\|ZP_03049906.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192957... gi\|74311922, gi\|... - gi\|74311922\|ref\|YP_310341.1\| hypothetical protein SSON_1396 [Shigella sonnei Ss046], gi\|73855399\|gb\|... gi\|194428503, gi... - gi\|194428503\|ref\|ZP_03061042.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194413381...	136.0	[0..5]	[95..1]
gi\|124499514, gi... - gi\|124529961\|ref\|ZP_01700773.1\| protein of unknown function DUF1496 [Escherichia coli B], gi\|1244995... EG14010 - DUF1496 family protein / Putative secreted protein, function unknown; DUF1496 family gi\|169754821, gi... - gi\|170019893\|ref\|YP_001724847.1\| hypothetical protein EcolC_1872 [Escherichia coli ATCC 8739], gi\|16... gi\|242377481, gi... - gi\|251785208\|ref\|YP_002999512.1\| hypothetical protein B21_01717 [Escherichia coli BL21], gi\|24237748... gi\|238862878, gi... - gi\|238900974\|ref\|YP_002926770.1\| hypothetical protein BWG_1573 [Escherichia coli BW2952], gi\|2388628... gi\|253973719, gi... - gi\|254161818\|ref\|YP_003044926.1\| hypothetical protein ECB_01729 [Escherichia coli B str. REL606], gi... gi\|253977913, gi... - gi\|254288606\|ref\|YP_003054354.1\| hypothetical protein ECD_01729 [Escherichia coli BL21(DE3)], gi\|253... gi\|194422545, gi... - gi\|194438535\|ref\|ZP_03070624.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442254... EG14010 - DUF1496 family protein / Putative secreted protein, function unknown; DUF1496 family gi\|89108599, gi\|... - gi\|89108599\|ref\|AP_002379.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|170081417, gi... - gi\|170081417\|ref\|YP_001730737.1\| hypothetical protein ECDH10B_1898 [Escherichia coli str. K-12 subst... YNJH_ECOLI - Hypothetical protein ynjH precursor - Escherichia coli	135.0	[0..5]	[95..1]
gi\|218554326, gi... - gi\|218554326\|ref\|YP_002387239.1\| hypothetical protein ECIAI1_1821 [Escherichia coli IAI1], gi\|218361... gi\|82776795, gi\|... - gi\|82776795\|ref\|YP_403144.1\| hypothetical protein SDY_1515 [Shigella dysenteriae Sd197], gi\|81240943... gi\|188495471, gi... - gi\|188495471\|ref\|ZP_03002741.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849067... gi\|157157965, gi... - gi\|157157965\|ref\|YP_001463058.1\| hypothetical protein EcE24377A_1982 [Escherichia coli E24377A], gi\|...	135.0	[0..5]	[95..1]
gi\|45441767, gi\|... - gi\|45441767\|ref\|NP_993306.1\| hypothetical protein YP_1966 [Yersinia pestis biovar Microtus str. 9100...	135.0	[0..1]	[94..1]
Q66AN8\|Q66AN8_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|22126043, gi\|... - gi\|22126043\|ref\|NP_669466.1\| hypothetical protein y2155 [Yersinia pestis KIM], gi\|21958995\|gb\|AAM857... gi\|25510637 - pir\|\|AB0264 probable exported protein YPO2166 [imported] - Yersinia pestis (strain CO92) gi\|16122398, gi\|... - gi\|218929266\|ref\|YP_002347141.1\| hypothetical protein YPO2166 [Yersinia pestis CO92], gi\|16122398\|re... gi\|77634439, gi\|... - gi\|77634439\|ref\|ZP_00796539.1\| hypothetical protein YpesA_01002158 [Yersinia pestis Angola], gi\|1624... gi\|51596418, gi\|... - gi\|51596418\|ref\|YP_070609.1\| hypothetical protein YPTB2092 [Yersinia pseudotuberculosis IP 32953], g... gi\|153950795, gi... - gi\|77629175\|ref\|ZP_00791761.1\| hypothetical protein YpseI_01000502 [Yersinia pseudotuberculosis IP 3... gi\|149292324, gi... - gi\|149365911\|ref\|ZP_01887946.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149292324\|... gi\|145209961, gi... - gi\|145598265\|ref\|YP_001162341.1\| hypothetical protein YPDSF_0968 [Yersinia pestis Pestoides F], gi\|1... gi\|167054425, gi... - gi\|167426549\|ref\|ZP_02318302.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|165912692, gi... - gi\|89102101\|ref\|ZP_01174763.1\| hypothetical protein Ypesb_01003854 [Yersinia pestis biovar Orientali... gi\|167420129, gi... - gi\|167420129\|ref\|ZP_02311882.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|108807519, gi... - gi\|108807519\|ref\|YP_651435.1\| hypothetical protein YPA_1523 [Yersinia pestis Antiqua], gi\|108779432\|... gi\|170024321, gi... - gi\|170024321\|ref\|YP_001720826.1\| hypothetical protein YPK_2087 [Yersinia pseudotuberculosis YPIII], ... gi\|229902091, gi... - gi\|229902091\|ref\|ZP_04517212.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229680987\|g... gi\|167469879 - gi\|167469879\|ref\|ZP_02334583.1\| hypothetical protein YpesF_18799 [Yersinia pestis FV-1] gi\|229894842, gi... - gi\|229894842\|ref\|ZP_04510022.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970231... gi\|186895464, gi... - gi\|186895464\|ref\|YP_001872576.1\| hypothetical protein YPTS_2156 [Yersinia pseudotuberculosis PB1/+],... gi\|229897586, gi... - gi\|229897586\|ref\|ZP_04512742.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|229688797, gi... - gi\|229898231\|ref\|ZP_04513379.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|166009254, gi... - gi\|166009254\|ref\|ZP_02230152.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165927691, gi... - gi\|165927691\|ref\|ZP_02223523.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167401487, gi... - gi\|167401487\|ref\|ZP_02306984.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166211008, gi... - gi\|166211008\|ref\|ZP_02237043.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ...	135.0	[0..1]	[94..1]
gi\|91210977, gi\|... - gi\|91210977\|ref\|YP_540963.1\| hypothetical protein UTI89_C1956 [Escherichia coli UTI89], gi\|91072551\|... gi\|237705711, gi... - gi\|237705711\|ref\|ZP_04536192.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|115513056, gi... - gi\|117623932\|ref\|YP_852845.1\| hypothetical protein APECO1_830 [Escherichia coli APEC O1], gi\|1155130... gi\|26108418, gi\|... - gi\|26248015\|ref\|NP_754055.1\| hypothetical protein c2161 [Escherichia coli CFT073], gi\|26108418\|gb\|AA... gi\|227837387, gi... - gi\|227885814\|ref\|ZP_04003619.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783738...	132.0	[0..5]	[95..1]
gi\|191171753, gi... - gi\|191171753\|ref\|ZP_03033300.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908083\|... gi\|110343472, gi... - gi\|110641880\|ref\|YP_669610.1\| hypothetical protein ECP_1706 [Escherichia coli 536], gi\|110343472\|gb\|...	130.0	[0..5]	[95..1]
lcl\|NC_016856.1_... - [gene=STM14_1578] [protein=hypothetical protein] [protein_id=YP_005237153.1] [location=1390194..1390... gi\|16764651, gi\|... - gi\|16764651\|ref\|NP_460266.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16419817\|... gi\|197241192, gi... - gi\|197262937\|ref\|ZP_03163011.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|167991884, gi... - gi\|205329707\|gb\|EDZ16471.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova...	124.0	[0..10]	[95..7]
gi\|213648614 - gi\|213648614\|ref\|ZP_03378667.1\| hypothetical protein SentesTy_15829 [Salmonella enterica subsp. ente... gi\|213427781 - gi\|213427781\|ref\|ZP_03360531.1\| hypothetical protein SentesTyphi_20645 [Salmonella enterica subsp. e... gi\|213977860 - gi\|213977860\|ref\|ZP_03405119.1\| hypothetical protein Salmonellaentericaenterica_26489 [Salmonella en... gi\|213850396 - gi\|213850396\|ref\|ZP_03381294.1\| hypothetical protein SentesT_02015 [Salmonella enterica subsp. enter... gi\|16760595 - gi\|16760595\|ref\|NP_456212.1\| hypothetical protein STY1814 [Salmonella enterica subsp. enterica serov... gi\|16502891, gi\|... - gi\|25512481\|pir\|\|AE0710 probable exported protein STY1814 [imported] - Salmonella enterica subsp. en... gi\|213162976 - gi\|213162976\|ref\|ZP_03348686.1\| hypothetical protein Salmoneentericaenterica_24296 [Salmonella enter... gi\|29141645, gi\|... - gi\|29141645\|ref\|NP_804987.1\| hypothetical protein t1179 [Salmonella enterica subsp. enterica serovar...	123.0	[0..9]	[95..6]
gi\|62179892, gi\|... - gi\|62179892\|ref\|YP_216309.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serov...	123.0	[0..10]	[95..7]

Back

Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLVSLCFA SVMLVLPTLA QANRGGTDIV VPVPPEVWGA GTTVREQSNN CLRCCVYENR  60
   61 NYSEGAVVKV EGVILQCVRD KQTLGTNNLI WQLIKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.30103
Match:	PF07383.3
Description:	No description for PF07383.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits