YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611782, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611782, gi|....

Description	E-value	Query Range	Subject Range
gi\|14970554 - gi\|14970554\|emb\|CAC44357.1\| H-NS protein [Erwinia chrysanthemi]	180.0	[0..1]	[135..42]
gi\|32491116, gi\|... - gi\|32491116\|ref\|NP_871370.1\| global DNA-binding transcriptional dual regulator H-NS [Wigglesworthia ...	165.0	[0..1]	[135..1]
gi\|77977792, gi\|... - gi\|77977792\|ref\|ZP_00833232.1\| COG2916: DNA-binding protein H-NS [Yersinia intermedia ATCC 29909], g...	164.0	[0..1]	[135..1]
gi\|85059348, gi\|... - gi\|85059348\|ref\|YP_455050.1\| global DNA-binding transcriptional dual regulator H-NS [Sodalis glossin...	163.0	[0..1]	[135..1]
gi\|77957073 - gi\|77957073\|ref\|ZP_00821139.1\| COG2916: DNA-binding protein H-NS [Yersinia bercovieri ATCC 43970] gi\|77960741 - gi\|77960741\|ref\|ZP_00824599.1\| COG2916: DNA-binding protein H-NS [Yersinia mollaretii ATCC 43969]	162.0	[0..1]	[135..1]
gi\|70909461 - gi\|70909461\|emb\|CAJ01809.1\| heat-stable nucleoid-structuring protein [Erwinia amylovora]	160.0	[0..1]	[135..1]
gi\|238709849, gi... - gi\|238751869\|ref\|ZP_04613355.1\| DNA-binding protein H-NS [Yersinia rohdei ATCC 43380], gi\|238709849\|... gi\|77972682, gi\|... - gi\|77972682\|ref\|ZP_00828242.1\| COG2916: DNA-binding protein H-NS [Yersinia frederiksenii ATCC 33641]...	159.0	[0..1]	[135..1]
gi\|122089458, gi... - gi\|123442497\|ref\|YP_001006475.1\| global DNA-binding transcriptional dual regulator H-NS [Yersinia en... gi\|13561120, gi\|... - gi\|13561120\|emb\|CAC36307.1\| H-NS protein [Yersinia enterocolitica], gi\|12406987\|emb\|CAC24849.1\| H-NS...	159.0	[0..1]	[135..1]
gi\|43078 - gi\|43078\|emb\|CAA47740.1\| H-ns [Escherichia coli]	158.0	[0..1]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-58]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEALKILNN IRTLRAQARE CTLDTLEEML EKLEVVVNER REEDSQVQAE VEERARKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.30103
Match:	1lr1A
Description:	H1 protein (H-NS)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.21550924222852	bayes_pls_golite062009
protein binding	1.37785152807615	bayes_pls_golite062009
identical protein binding	0.543551942364222	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [59-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQYRDMLIAD GIDPNELLQS LGSVKVAGKS KRAARPAKYQ YIDENGEAKT WTGQGRTPAV  60
   61 IKKAIEEQGK SLDDFLL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.79
Match:	2jr1A
Description:	No description for 2jr1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: