YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50121242, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50121242, gi|....

Description	E-value	Query Range	Subject Range
gi\|59711631, gi\|... - gi\|59711631\|ref\|YP_204407.1\| hydrolase [Vibrio fischeri ES114], gi\|59479732\|gb\|AAW85519.1\| predicted...	149.0	[0..7]	[131..17]
gi\|116190020, gi... - gi\|75831037\|ref\|ZP_00760305.1\| COG1607: Acyl-CoA hydrolase [Vibrio cholerae MO10], gi\|116190020\|ref\|... gi\|75820140, gi\|... - gi\|75820140\|ref\|ZP_00750195.1\| COG1607: Acyl-CoA hydrolase [Vibrio cholerae V51], gi\|116221264\|ref\|Z... gi\|75827054 - gi\|75827054\|ref\|ZP_00756489.1\| COG1607: Acyl-CoA hydrolase [Vibrio cholerae O395] gi\|75815642 - gi\|75815642\|ref\|ZP_00746140.1\| COG1607: Acyl-CoA hydrolase [Vibrio cholerae V52] tr\|A0A085SP41\|A0... - Uncharacterized protein OS=Vibrio cholerae GN=DA89_2641 PE=4 SV=1	146.0	[0..1]	[129..1]
gi\|15641705, gi\|... - gi\|9656219\|gb\|AAF94851.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|153800996, gi... - gi\|153800996\|ref\|ZP_01955582.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123466... gi\|227013607, gi... - gi\|227118157\|ref\|YP_002820053.1\| Acyl-CoA thioester hydrolase [Vibrio cholerae O395], gi\|227013607\|g... gi\|11282842 - pir\|\|B82167 conserved hypothetical protein VC1701 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|153221802, gi... - gi\|153221802\|ref\|ZP_01952687.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241194... gi\|254224850, gi... - gi\|254224850\|ref\|ZP_04918465.1\| conserved hypothetical protein [Vibrio cholerae V51], gi\|194537925\|r... gi\|254848820, gi... - gi\|254848820\|ref\|ZP_05238170.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254844525\|... gi\|229511572, gi... - gi\|229511572\|ref\|ZP_04401051.1\| acyl-CoA hydrolase [Vibrio cholerae B33], gi\|229351537\|gb\|EEO16478.1... gi\|153817178, gi... - gi\|153817178\|ref\|ZP_01969845.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|254285357, gi... - gi\|254285357\|ref\|ZP_04960322.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197753... gi\|148873600, gi... - gi\|153830921\|ref\|ZP_01983588.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887360... gi\|149740901, gi... - gi\|153825489\|ref\|ZP_01978156.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740901... gi\|229508190, gi... - gi\|229508190\|ref\|ZP_04397695.1\| acyl-CoA hydrolase [Vibrio cholerae BX 330286], gi\|229355695\|gb\|EEO2... gi\|227009738, gi... - gi\|227081850\|ref\|YP_002810401.1\| Acyl-CoA thioester hydrolase [Vibrio cholerae M66-2], gi\|227009738\|... gi\|229523793, gi... - gi\|229523793\|ref\|ZP_04413198.1\| acyl-CoA hydrolase [Vibrio cholerae bv. albensis VL426], gi\|22933737... gi\|229520697, gi... - gi\|229520697\|ref\|ZP_04410120.1\| acyl-CoA hydrolase [Vibrio cholerae TM 11079-80], gi\|229342252\|gb\|EE... gi\|229343400, gi... - gi\|229518711\|ref\|ZP_04408154.1\| acyl-CoA hydrolase [Vibrio cholerae RC9], gi\|229343400\|gb\|EEO08375.1... gi\|229347797, gi... - gi\|229515092\|ref\|ZP_04404552.1\| acyl-CoA hydrolase [Vibrio cholerae TMA 21], gi\|229347797\|gb\|EEO1275... gi\|153213898, gi... - gi\|153213898\|ref\|ZP_01949100.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124115636\|... gi\|229370418, gi... - gi\|229607763\|ref\|YP_002878411.1\| acyl-CoA hydrolase [Vibrio cholerae MJ-1236], gi\|229370418\|gb\|ACQ60... gi\|121586947, gi... - gi\|121586947\|ref\|ZP_01676726.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215487... gi\|229529270, gi... - gi\|229529270\|ref\|ZP_04418660.1\| acyl-CoA hydrolase [Vibrio cholerae 12129(1)], gi\|229333044\|gb\|EEN98...	146.0	[0..1]	[129..8]
gi\|47168418, gi\|... - gi\|60594418\|pdb\|1YLI\|B Chain B, Crystal Structure Of Hi0827, A Hexameric Broad Specificity Acyl-Coen...	143.0	[0..6]	[130..10]
gi\|75853851, gi\|... - gi\|75853851\|ref\|ZP_00761602.1\| COG1607: Acyl-CoA hydrolase [Vibrio sp. Ex25], gi\|116183380\|ref\|ZP_01...	143.0	[0..1]	[129..1]
gi\|145632186, gi... - gi\|145632186\|ref\|ZP_01787921.1\| hypothetical protein CGSHi3655_07024 [Haemophilus influenzae 3655], ... Y827_HAEIN - Uncharacterized acyl-CoA thioester hydrolase HI_0827 OS=Haemophilus influenzae (strain ATCC 51907 / ... Y827_HAEIN, YCIA... - (P44886) Putative acyl-CoA thioester hydrolase HI0827 (EC 3.1.2.-), Uncharacterized acyl-CoA thioest... gi\|229844695, gi... - gi\|229844695\|ref\|ZP_04464834.1\| hypothetical protein CGSHi6P18H1_03774 [Haemophilus influenzae 6P18H... gi\|145274446, gi... - gi\|145640932\|ref\|ZP_01796514.1\| hypothetical protein CGSHiR3021_07682 [Haemophilus influenzae R3021]... gi\|145640932 - gi\|145640932\|ref\|ZP_01796514.1\| hypothetical protein CGSHiR3021_07682 [Haemophilus influenzae R3021] gi\|145634761, gi... - gi\|145634761\|ref\|ZP_01790469.1\| Trp operon repressor [Haemophilus influenzae PittAA], gi\|145267927\|g...	142.0	[0..6]	[130..11]
gi\|148716688, gi... - gi\|148826528\|ref\|YP_001291281.1\| Trp operon repressor [Haemophilus influenzae PittEE], gi\|148716688\|... gi\|46129192 - gi\|46129192\|ref\|ZP_00202029.1\| COG1607: Acyl-CoA hydrolase [Haemophilus influenzae R2846] gi\|229845878, gi... - gi\|229845878\|ref\|ZP_04465990.1\| Trp operon repressor [Haemophilus influenzae 7P49H1], gi\|229810882\|g...	142.0	[0..6]	[130..11]
gi\|144983966 - gi\|144983966\|gb\|EDJ91408.1\| putative acyl-CoA thioester hydrolase [Haemophilus influenzae R3021] gi\|48867705, gi\|... - gi\|68249422\|ref\|YP_248534.1\| putative acyl-CoA thioester hydrolase [Haemophilus influenzae 86-028NP]... gi\|145638371, gi... - gi\|145638371\|ref\|ZP_01793981.1\| Trp operon repressor [Haemophilus influenzae PittII], gi\|145272700\|g... gi\|46133151 - gi\|46133151\|ref\|ZP_00203092.1\| COG1607: Acyl-CoA hydrolase [Haemophilus influenzae R2866] gi\|145270139, gi... - gi\|145636613\|ref\|ZP_01792280.1\| Trp operon repressor [Haemophilus influenzae PittHH], gi\|145270139\|g... gi\|145630576 - gi\|145630576\|ref\|ZP_01786356.1\| putative acyl-CoA thioester hydrolase [Haemophilus influenzae 22.4-2...	142.0	[0..6]	[130..11]
gi\|153840211, gi... - gi\|153840211\|ref\|ZP_01992878.1\| acyl-CoA thioester hydrolase YciA [Vibrio parahaemolyticus AQ3810], ... gi\|28806963 - gi\|28806963\|dbj\|BAC60234.1\| putative acyl-CoA hydrolase [Vibrio parahaemolyticus RIMD 2210633] gi\|28806963, gi\|... - gi\|28898745\|ref\|NP_798350.1\| putative acyl-CoA hydrolase [Vibrio parahaemolyticus RIMD 2210633], gi\|...	141.0	[0..1]	[129..1]
YCIA_SALTY - Acyl-CoA thioester hydrolase YciA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN... gi\|224468299, gi... - gi\|224583772\|ref\|YP_002637570.1\| putative Acyl-CoA hydrolase [Salmonella enterica subsp. enterica se... gi\|29142084, gi\|... - gi\|29142084\|ref\|NP_805426.1\| acyl-CoA thioester hydrolase [Salmonella enterica subsp. enterica serov... YCIA_SALTI - Acyl-CoA thioester hydrolase yciA OS=Salmonella typhi GN=yciA PE=3 SV=1 YCIA_SALTY - Acyl-CoA thioester hydrolase yciA OS=Salmonella typhimurium GN=yciA PE=3 SV=1 YCIA_SALTI - Acyl-CoA thioester hydrolase YciA OS=Salmonella typhi GN=yciA PE=3 SV=1 gi\|197362264, gi... - gi\|197362264\|ref\|YP_002141901.1\| acyl-CoA thioester hydrolase [Salmonella enterica subsp. enterica s... gi\|16760145 - gi\|16760145\|ref\|NP_455762.1\| acyl-CoA thioester hydrolase [Salmonella enterica subsp. enterica serov... gi\|205272372, gi... - gi\|205352591\|ref\|YP_002226392.1\| acyl-CoA thioester hydrolase [Salmonella enterica subsp. enterica s... gi\|207856752, gi... - gi\|207856752\|ref\|YP_002243403.1\| acyl-CoA thioester hydrolase [Salmonella enterica subsp. enterica s... gi\|62127935, gi\|... - gi\|62180302\|ref\|YP_216719.1\| acyl-CoA thioester hydrolase [Salmonella enterica subsp. enterica serov... YCIA_SALTY - Acyl-CoA thioester hydrolase YciA OS=Salmonella typhimurium GN=yciA PE=3 SV=1 gi\|56413339, gi\|... - gi\|56413339\|ref\|YP_150414.1\| acyl-CoA thioester hydrolase [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=yciA] [protein=acyl-CoA thioester hydrolase] [protein_id=YP_005237662.1] [location=1841488..18...	141.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQNVLPQG ELVLRTLAMP ADTNANGDIF GGWLMSQMDM GGAILAKEIA EGRVVTVRVD  60
   61 GMSFLKPVAV GDVVCCYARC LRTGRSSINV NVEVWVKKVS SEPIGQRYRA TEALFTYVAV 120
  121 DEEGQPRELP AGKSNFTPSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1yliA
Description:	Structure of HI0827, a thioesterase acting on short-chain acyl-CoA compounds
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.11649534052993	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: