YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611673, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611673, gi|....

Description	E-value	Query Range	Subject Range
gi\|72122718, gi\|... - gi\|73539381\|ref\|YP_299748.1\| OsmC-like protein [Ralstonia eutropha JMP134], gi\|72122718\|gb\|AAZ64904....	149.0	[0..2]	[141..5]
gi\|94312550, gi\|... - gi\|94312550\|ref\|YP_585759.1\| OsmC-like protein [Ralstonia metallidurans CH34], gi\|93356402\|gb\|ABF104...	148.0	[0..2]	[141..5]
gi\|84389399, gi\|... - gi\|84389399\|ref\|ZP_00991205.1\| osmotically inducible protein C [Vibrio splendidus 12B01], gi\|8437691...	148.0	[0..1]	[142..1]
gi\|85837909, gi\|... - gi\|86145010\|ref\|ZP_01063342.1\| osmotically inducible protein C [Vibrio sp. MED222], gi\|85837909\|gb\|E...	147.0	[0..1]	[142..1]
gi\|148871216, gi... - gi\|153832650\|ref\|ZP_01985317.1\| conserved hypothetical protein [Vibrio harveyi HY01], gi\|148871216\|g... gi\|156975994, gi... - gi\|156975994\|ref\|YP_001446900.1\| redox protein, regulator of disulfide bond formation [Vibrio harvey... gi\|91191862, gi\|... - gi\|91223049\|ref\|ZP_01258315.1\| putative organic hydroperoxide resistance protein [Vibrio alginolytic...	147.0	[0..1]	[142..1]
gi\|46323482, gi\|... - gi\|67549357\|ref\|ZP_00427223.1\| OsmC-like protein [Burkholderia vietnamiensis G4], gi\|67529353\|gb\|EAM...	147.0	[0..1]	[141..1]
gi\|92911486, gi\|... - gi\|92911486\|ref\|ZP_01280258.1\| OsmC-like protein [Mycobacterium sp. JLS], gi\|92430998\|gb\|EAS90337.1\|...	147.0	[0..1]	[141..39]
gi\|116187078, gi... - gi\|75857459\|ref\|ZP_00765074.1\| COG1764: Predicted redox protein, regulator of disulfide bond formati...	147.0	[0..1]	[142..1]
gi\|74015002, gi\|... - gi\|74015002\|ref\|ZP_00685630.1\| OsmC-like protein [Burkholderia ambifaria AMMD], gi\|72611805\|gb\|EAO47... gi\|118695706, gi... - gi\|172062793\|ref\|YP_001810444.1\| OsmC family protein [Burkholderia ambifaria MC40-6], gi\|171995310\|g...	146.0	[0..1]	[141..1]
gi\|92439530, gi\|... - gi\|92916323\|ref\|ZP_01284943.1\| OsmC-like protein [Mycobacterium sp. KMS], gi\|92439530\|gb\|EAS97377.1\|... gi\|108768567, gi... - gi\|108798148\|ref\|YP_638345.1\| OsmC-like protein [Mycobacterium sp. MCS], gi\|108768567\|gb\|ABG07289.1\|... gi\|126233607, gi... - gi\|126433807\|ref\|YP_001069498.1\| OsmC family protein [Mycobacterium sp. JLS], gi\|126233607\|gb\|ABN970...	146.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIHKKGQAH WEGDIKQGKG TVSTESGALQ QQPYGFNTRF EGKPGTNPEE LIGAAHAACF  60
   61 SMALSLMLGE EGHKPESIDT TADVSLDKVD GGFAITKIAL HSTVTLPGID EATFDKIIQK 120
  121 AKAGCPVSKV LKAEITLDYQ LN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1nyeA
Description:	Crystal structure of OsmC from E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peroxidase activity	0.342292807359152	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	0.342292807359152	bayes_pls_golite062009
antioxidant activity	0.169551834226413	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: