YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611645, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611645, gi|....

Description	E-value	Query Range	Subject Range
gi\|77979775, gi\|... - gi\|77979775\|ref\|ZP_00835191.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia inte...	142.0	[0..1]	[130..1]
gi\|238788552, gi... - gi\|77973500\|ref\|ZP_00829047.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia fred...	141.0	[0..1]	[130..1]
gi\|167424756, gi... - gi\|167424756\|ref\|ZP_02316509.1\| sirB family protein [Yersinia pestis biovar Mediaevalis str. K197300... gi\|167471070 - gi\|167471070\|ref\|ZP_02335774.1\| sirB family protein [Yersinia pestis FV-1] gi\|170024408, gi... - gi\|170024408\|ref\|YP_001720913.1\| invasion gene expression up-regulator SirB [Yersinia pseudotubercul... gi\|186895376, gi... - gi\|186895376\|ref\|YP_001872488.1\| invasion gene expression up-regulator SirB [Yersinia pseudotubercul... gi\|22126173, gi\|... - gi\|22126173\|ref\|NP_669596.1\| hypothetical protein y2288 [Yersinia pestis KIM], gi\|21959137\|gb\|AAM858... gi\|25356410 - pir\|\|AE0246 probable membrane protein YPO2019 [imported] - Yersinia pestis (strain CO92) gi\|51596333, gi\|... - gi\|51596333\|ref\|YP_070524.1\| hypothetical protein YPTB2007 [Yersinia pseudotuberculosis IP 32953], g... gi\|45441671, gi\|... - gi\|45441671\|ref\|NP_993210.1\| hypothetical protein YP_1867 [Yersinia pestis biovar Microtus str. 9100... gi\|165926456, gi... - gi\|165926456\|ref\|ZP_02222288.1\| sirB family protein [Yersinia pestis biovar Orientalis str. F1991016... gi\|165991812, gi... - gi\|166009257\|ref\|ZP_02230155.1\| sirB family protein [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|218929130, gi... - gi\|218929130\|ref\|YP_002347005.1\| hypothetical protein YPO2019 [Yersinia pestis CO92], gi\|16122262\|re... Q66AX3\|Q66AX3_YERPS - Putative membrane protein - Yersinia pseudotuberculosis gi\|166208368, gi... - gi\|166211188\|ref\|ZP_02237223.1\| sirB family protein [Yersinia pestis biovar Antiqua str. B42003004],... gi\|167401416, gi... - gi\|167401416\|ref\|ZP_02306913.1\| sirB family protein [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|167420015, gi... - gi\|167420015\|ref\|ZP_02311768.1\| sirB family protein [Yersinia pestis biovar Orientalis str. MG05-102... gi\|89104290, gi\|... - gi\|89104290\|ref\|ZP_01176837.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108807399, gi... - gi\|108807399\|ref\|YP_651315.1\| hypothetical protein YPA_1403 [Yersinia pestis Antiqua], gi\|108779312\|... gi\|229680838, gi... - gi\|229901942\|ref\|ZP_04517063.1\| putative membrane protein [Yersinia pestis Nepal516], gi\|229680838\|g... gi\|77635380, gi\|... - gi\|77635380\|ref\|ZP_00797465.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|153948495, gi... - gi\|77629091\|ref\|ZP_00791677.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|149292462, gi... - gi\|149366049\|ref\|ZP_01888084.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149292462\|... gi\|229898073, gi... - gi\|229898073\|ref\|ZP_04513224.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. In... gi\|229693767, gi... - gi\|229897430\|ref\|ZP_04512586.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. PE... gi\|229894730, gi... - gi\|229894730\|ref\|ZP_04509910.1\| putative membrane protein [Yersinia pestis Pestoides A], gi\|22970220... gi\|145598394, gi... - gi\|145598394\|ref\|YP_001162470.1\| hypothetical protein YPDSF_1099 [Yersinia pestis Pestoides F], gi\|1...	141.0	[0..1]	[130..1]
gi\|238718359, gi... - gi\|77963728\|ref\|ZP_00827536.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia moll...	140.0	[0..1]	[130..1]
gi\|238783271, gi... - gi\|77959376\|ref\|ZP_00823396.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia berc...	140.0	[0..1]	[130..1]
gi\|46914431, gi\|... - gi\|54309992\|ref\|YP_131012.1\| hypothetical protein PBPRA2843 [Photobacterium profundum SS9], gi\|46914...	128.0	[0..4]	[129..1]
gi\|27359848, gi\|... - gi\|27363732\|ref\|NP_759260.1\| hypothetical protein VV1_0251 [Vibrio vulnificus CMCP6], gi\|27359848\|gb... gi\|37197859, gi\|... - gi\|37679117\|ref\|NP_933726.1\| hypothetical protein VV0933 [Vibrio vulnificus YJ016], gi\|37197859\|dbj\|...	127.0	[0..4]	[128..1]
gi\|90412792, gi\|... - gi\|90412792\|ref\|ZP_01220792.1\| hypothetical protein P3TCK_25975 [Photobacterium profundum 3TCK], gi\|...	127.0	[0..4]	[129..1]
gi\|28805731, gi\|... - gi\|28897519\|ref\|NP_797124.1\| hypothetical protein VP0745 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|149745420, gi... - gi\|153842020\|ref\|ZP_01993462.1\| transcriptional regulator [Vibrio parahaemolyticus AQ3810], gi\|14974... gi\|28805731 - gi\|28805731\|dbj\|BAC59008.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	126.0	[0..4]	[129..1]
gi\|75854050, gi\|... - gi\|75854050\|ref\|ZP_00761772.1\| COG3094: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex... gi\|91228929, gi\|... - gi\|91228929\|ref\|ZP_01262827.1\| hypothetical protein V12G01_15290 [Vibrio alginolyticus 12G01], gi\|91...	125.0	[0..4]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITLYPATIY LHLATVGISI SLFVIRFFWL CRQSALLQQR WVKILPHIND TLLLISGIGL  60
   61 IILSHTYPFT PEQSWLTEKL FGVIIYILLG AIALGKRPRS QKVRWLAFVS ALLCFGVVVL 120
  121 LALTQSPLLM E

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.823909
Match:	PF04247.3
Description:	No description for PF04247.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits