YRC Public Data Repository - Protein Structure Prediction

Protein:	AZOR_PECAS
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AZOR_PECAS.

Description	E-value	Query Range	Subject Range
ACPD3_PSEAE, AZO... - FMN-dependent NADH-azoreductase 3 OS=Pseudomonas aeruginosa GN=azoR3 PE=3 SV=1, (Q9HZ17) Putative ac... gi\|107102753 - gi\|107102753\|ref\|ZP_01366671.1\| hypothetical protein PaerPA_01003820 [Pseudomonas aeruginosa PACS2] gi\|218890584, gi... - gi\|218890584\|ref\|YP_002439448.1\| acyl carrier protein phosphodiesterase [Pseudomonas aeruginosa LESB... AZOR3_PSEAE - FMN-dependent NADH-azoreductase 3 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101... gi\|84326131, gi\|... - gi\|84326131\|ref\|ZP_00974161.1\| COG1182: Acyl carrier protein phosphodiesterase [Pseudomonas aerugino...	188.0	[0..1]	[200..1]
gi\|49078750 - gi\|49078750\|gb\|AAT49816.1\| PA3223 [synthetic construct]	188.0	[0..1]	[200..1]
gi\|46164107, gi\|... - gi\|46164107\|ref\|ZP_00136572.2\| COG1182: Acyl carrier protein phosphodiesterase [Pseudomonas aerugino...	187.0	[0..1]	[200..1]
gi\|124499905, gi... - gi\|124529447\|ref\|ZP_01700451.1\| (Acyl-carrier-protein) phosphodiesterase [Escherichia coli B], gi\|12... EG12695 - NADH-azoreductase, FMN-dependent / NADH-azoreductase, FMN-dependent AZOR_ECOLC - FMN-dependent NADH-azoreductase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=azoR P... gi\|238861880, gi... - gi\|238900640\|ref\|YP_002926436.1\| NADH-azoreductase, FMN-dependent [Escherichia coli BW2952], gi\|2388... AZOR_ECOLI - FMN-dependent NADH-azoreductase (EC 1.7.-.-) (FMN-dependent NADH-azo compound oxidoreductase) (Azo-d... gi\|75515001, gi\|... - gi\|75515001\|ref\|ZP_00737205.1\| COG1182: Acyl carrier protein phosphodiesterase [Escherichia coli 536... AZOR_ECOHS - FMN-dependent NADH-azoreductase OS=Escherichia coli O9:H4 (strain HS) GN=azoR PE=3 SV=1 gi\|89108257, gi\|... - gi\|89108257\|ref\|AP_002037.1\| NADH-azoreductase, FMN-dependent [Escherichia coli str. K-12 substr. W3... EG12695 - NADH-azoreductase, FMN-dependent / NADH-azoreductase, FMN-dependent gi\|170081088, gi... - gi\|170081088\|ref\|YP_001730408.1\| NADH-azoreductase, FMN-dependent [Escherichia coli str. K-12 substr...	187.0	[0..1]	[201..1]
AZOR_AZOVD - FMN-dependent NADH-azoreductase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=azoR PE=3 S... gi\|23102364, gi\|... - gi\|67158481\|ref\|ZP_00419426.1\| [Acyl-carrier protein] phosphodiesterase [Azotobacter vinelandii AvOP...	187.0	[0..1]	[199..1]
gi\|126168116, gi... - gi\|84320050\|ref\|ZP_00968436.1\| COG1182: Acyl carrier protein phosphodiesterase [Pseudomonas aerugino...	187.0	[0..1]	[200..1]
AZOR2_PSEF5 - FMN-dependent NADH-azoreductase 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=azoR2 P...	187.0	[0..1]	[199..1]
gi\|238792239, gi... - gi\|77979510\|ref\|ZP_00834928.1\| COG1182: Acyl carrier protein phosphodiesterase [Yersinia intermedia ...	187.0	[0..1]	[201..1]
gi\|194434299, gi... - gi\|83569239\|ref\|ZP_00920696.1\| COG1182: Acyl carrier protein phosphodiesterase [Shigella dysenteriae... gi\|187428721, gi... - gi\|75178645\|ref\|ZP_00698691.1\| COG1182: Acyl carrier protein phosphodiesterase [Shigella boydii BS51... gi\|192959582, gi... - gi\|75239960\|ref\|ZP_00723921.1\| COG1182: Acyl carrier protein phosphodiesterase [Escherichia coli E11... AZOR_SHISS - FMN-dependent NADH-azoreductase OS=Shigella sonnei (strain Ss046) GN=azoR PE=3 SV=1 AZOR_ECO24 - FMN-dependent NADH-azoreductase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=azoR PE=3 SV... gi\|75212820, gi\|... - gi\|75212820\|ref\|ZP_00712818.1\| COG1182: Acyl carrier protein phosphodiesterase [Escherichia coli B17... gi\|237705393, gi... - gi\|237705393\|ref\|ZP_04535874.1\| azoreductase [Escherichia sp. 3_2_53FAA], gi\|226900150\|gb\|EEH86409.1... AZOR_SHIBS - FMN-dependent NADH-azoreductase OS=Shigella boydii serotype 4 (strain Sb227) GN=azoR PE=3 SV=1 gi\|218365117, gi... - gi\|218558348\|ref\|YP_002391261.1\| azoreductase [Escherichia coli S88], gi\|218365117\|emb\|CAR02826.1\| N... gi\|218351685, gi... - gi\|218694953\|ref\|YP_002402620.1\| azoreductase [Escherichia coli 55989], gi\|218351685\|emb\|CAU97400.1\|... AZOR_ECOUT - FMN-dependent NADH-azoreductase OS=Escherichia coli (strain UTI89 / UPEC) GN=azoR PE=3 SV=1	187.0	[0..1]	[201..1]
gi\|194424440, gi... - gi\|83587760\|ref\|ZP_00926386.1\| COG1182: Acyl carrier protein phosphodiesterase [Escherichia coli 101...	187.0	[0..1]	[201..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVLVLKSS ILAGYSQSNQ LADHFTTQWQ SAHPDDSITV RDLAAQPIPV LDGELVGALR  60
   61 PSDATLTPRQ QEALKLSDDL IAELQAHDVI VIAAPMYNFN IPTQLKNYFD LVARAGVTFR 120
  121 YTEQGPEGLV KGKRAIVLTS RGGIHKGTPT DLLEPYLRVF LGFLGLTDLE FVFAEGYGYG 180
  181 PDVAQKATED AKTQLSQLVT A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1tikA
Description:	CRYSTAL STRUCTURE OF ACYL CARRIER PROTEIN PHOSPHODIESTERASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: