YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50120650, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50120650, gi|....

Description	E-value	Query Range	Subject Range
MOPB_PECCC - Protein MopB OS=Pectobacterium carotovorum subsp. carotovorum GN=mopB PE=3 SV=1 gi\|479743 - pir\|\|S35275 probable flagellar biosynthesis protein mopB - Erwinia carotovora subsp. atroseptica MOPB_ERWCA - (P34199) Protein mopB	145.0	[0..1]	[140..1]
gi\|8978780, gi\|1... - gi\|8978780\|dbj\|BAA98616.1\| CT102 hypothetical protein [Chlamydophila pneumoniae J138], gi\|15835941\|r... gi\|33236266, gi\|... - gi\|33241757\|ref\|NP_876698.1\| hypothetical protein CpB0424 [Chlamydophila pneumoniae TW-183], gi\|3323... gi\|7189273, gi\|1... - gi\|7189273\|gb\|AAF38198.1\| conserved hypothetical protein [Chlamydophila pneumoniae AR39], gi\|1675263... gi\|7468044, gi\|2... - pir\|\|G72082 conserved hypothetical protein CP0346 [imported] - Chlamydophila pneumoniae (strains CWL... gi\|4376688, gi\|1... - gi\|4376688\|gb\|AAD18552.1\| CT102 hypothetical protein [Chlamydophila pneumoniae CWL029], gi\|15618323\|...	123.0	[0..6]	[140..12]
gi\|213927849, gi... - gi\|213967548\|ref\|ZP_03395696.1\| flagellar protein FliO [Pseudomonas syringae pv. tomato T1], gi\|2139... tr\|Q884W5\|Q884W5... - Flagellar protein FliO OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=fliO PE=4 SV=1 gi\|28852415, gi\|... - gi\|28869175\|ref\|NP_791794.1\| flagellar protein FliO [Pseudomonas syringae pv. tomato str. DC3000], g...	119.0	[0..24]	[140..34]
gi\|63257381, gi\|... - gi\|66046674\|ref\|YP_236515.1\| flagellar biosynthesis protein, FliO [Pseudomonas syringae pv. syringae... tr\|F3G9F7\|F3G9F7... - Flagellar protein OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_15488 PE=3 SV=1	119.0	[0..24]	[140..34]
FLIO_SALTY - Flagellar protein fliO OS=Salmonella typhimurium GN=fliO PE=1 SV=1 gi\|194712412, gi... - gi\|194736910\|ref\|YP_002115012.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar... gi\|194457285, gi... - gi\|194470921\|ref\|ZP_03076905.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar ... gi\|194450292, gi... - gi\|194450292\|ref\|YP_002046029.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=fliO] [protein=flagellar biosynthesis protein FliO] [protein_id=YP_005237948.1] [location=2076... gi\|194445467, gi... - gi\|194445467\|ref\|YP_002041243.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar... FLIO_SALTY - Flagellar protein fliO OS=Salmonella typhimurium GN=fliO PE=1 SV=1 gi\|197937789, gi... - gi\|198243273\|ref\|YP_002215108.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar... gi\|197093512, gi... - gi\|197362035\|ref\|YP_002141672.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ent... gi\|197262300, gi... - gi\|197262300\|ref\|ZP_03162374.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar ... gi\|197247762, gi... - gi\|197247762\|ref\|YP_002146045.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar... gi\|168239218, gi... - gi\|197288079\|gb\|EDY27466.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Schw... gi\|205331851, gi... - gi\|205331851\|gb\|EDZ18615.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Kent... gi\|167993553, gi... - gi\|205328408\|gb\|EDZ15172.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar 4,[5... gi\|167552789, gi... - gi\|205322631\|gb\|EDZ10470.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Sain... gi\|168823021, gi... - gi\|205340681\|gb\|EDZ27445.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Welt... gi\|195634480, gi... - gi\|195634480\|gb\|EDX52832.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Newp... gi\|168259735, gi... - gi\|205351185\|gb\|EDZ37816.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Hada... gi\|168244829, gi... - gi\|205336353\|gb\|EDZ23117.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Heid... gi\|213978533 - gi\|213978533\|ref\|ZP_03405792.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... gi\|213650744 - gi\|213650744\|ref\|ZP_03380797.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... gi\|56413109, gi\|... - gi\|56413109\|ref\|YP_150184.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. enteric... FLIO_SALTI - Flagellar protein FliO OS=Salmonella typhi GN=fliO PE=3 SV=1 gi\|213023113 - gi\|213023113\|ref\|ZP_03337560.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... FLIO_SALTY - Flagellar protein FliO OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fliO PE=1 ... gi\|206708312, gi... - gi\|207856509\|ref\|YP_002243160.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ent... gi\|205272109, gi... - gi\|205352328\|ref\|YP_002226129.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ent... FLIO_SALTI - Flagellar protein fliO OS=Salmonella typhi GN=fliO PE=3 SV=1 gi\|199602834, gi... - gi\|200390389\|ref\|ZP_03217000.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar ... gi\|213616271 - gi\|213616271\|ref\|ZP_03372097.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... gi\|213584778 - gi\|213584778\|ref\|ZP_03366604.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... gi\|29137013, gi\|... - gi\|29141386\|ref\|NP_804728.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. enteric... gi\|213424996 - gi\|213424996\|ref\|ZP_03357746.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... gi\|16760922 - gi\|16760922\|ref\|NP_456539.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. enteric... gi\|213163377 - gi\|213163377\|ref\|ZP_03349087.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente...	117.0	[0..18]	[139..6]
gi\|71553997, gi\|... - gi\|71733444\|ref\|YP_275529.1\| flagellar protein FliO [Pseudomonas syringae pv. phaseolicola 1448A], g...	117.0	[0..24]	[140..34]
gi\|62128186, gi\|... - gi\|62180553\|ref\|YP_216970.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. enteric... gi\|224583523, gi... - gi\|224583523\|ref\|YP_002637321.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar...	117.0	[0..18]	[139..6]
gi\|74017650, gi\|... - gi\|74017650\|ref\|ZP_00688273.1\| Flagellar biosynthesis protein, FliO [Burkholderia ambifaria AMMD], g...	115.0	[0..5]	[128..38]
gi\|30138364, gi\|... - gi\|30248478\|ref\|NP_840548.1\| mopB flagellar biosynthesis [Nitrosomonas europaea ATCC 19718], gi\|3013...	114.0	[0..11]	[138..22]
gi\|134137328, gi... - gi\|67546874\|ref\|ZP_00424783.1\| Flagellar biosynthesis protein, FliO [Burkholderia vietnamiensis G4],...	112.0	[0..5]	[127..37]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASVSSPT SVASQQSTLV TEPPLTGSML LTQVGSVLAG ILLFILLIAW LARKLGFAPQ  60
   61 TKQNKLLKVV SSCPVGQRER VVIVEVDNTW LVLGVTAQQI TPLHTLPAQP INDSSSTGDT 120
  121 KPVDFNQLLK KVLKRPEKSE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.251812
Match:	PF04347.4
Description:	No description for PF04347.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.762	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.731	N/A	N/A	b.55.1	PH domain-like
View	Download	0.679	N/A	N/A	d.222.1	YbaB-like
View	Download	0.673	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.664	N/A	N/A	d.129.1	TATA-box binding protein-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits