YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611167, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611167, gi|....

Description	E-value	Query Range	Subject Range
gi\|7443088 - pir\|\|C70372 flagellar hook basal body protein flgG - Aquifex aeolicus gi\|15606190, gi\|... - gi\|2983377\|gb\|AAC06963.1\| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi\|15606190...	256.0	[0..1]	[260..1]
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	254.0	[0..1]	[260..1]
gi\|71484066, gi\|... - gi\|71550721\|ref\|ZP_00670810.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078 ...	253.0	[0..1]	[260..1]
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	253.0	[0..1]	[260..1]
gi\|77959474, gi\|... - gi\|77959474\|ref\|ZP_00823493.1\| COG4786: Flagellar basal body rod protein [Yersinia bercovieri ATCC 4...	251.0	[0..1]	[260..1]
gi\|82410520, gi\|... - gi\|82702455\|ref\|YP_412021.1\| hypothetical protein Nmul_A1326 [Nitrosospira multiformis ATCC 25196], ...	251.0	[0..1]	[260..1]
gi\|58582198, gi\|... - gi\|58582198\|ref\|YP_201214.1\| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...	251.0	[0..1]	[259..81]
gi\|30138210, gi\|... - gi\|30248324\|ref\|NP_840394.1\| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC 19718...	250.0	[0..1]	[260..1]
FLGG_SALTY - Flagellar basal-body rod protein flgG OS=Salmonella typhimurium GN=flgG PE=1 SV=1 FLGG_SALTY - Flagellar basal-body rod protein flgG OS=Salmonella typhimurium GN=flgG PE=1 SV=1 lcl\|NC_016856.1_... - [gene=flgG] [protein=flagellar basal body rod protein FlgG] [protein_id=YP_005236934.1] [location=12... gi\|62179696, gi\|... - gi\|62179696\|ref\|YP_216113.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enter... gi\|56413834, gi\|... - gi\|56413834\|ref\|YP_150909.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enter... gi\|197289797, gi... - gi\|197289797\|gb\|EDY29158.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enteri... gi\|168234105, gi... - gi\|205331903\|gb\|EDZ18667.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enteri... gi\|167994043, gi... - gi\|205328014\|gb\|EDZ14778.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enteri... gi\|205322431, gi... - gi\|205322431\|gb\|EDZ10270.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enteri... gi\|168822622, gi... - gi\|205341038\|gb\|EDZ27802.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enteri... gi\|168467131, gi... - gi\|195630467\|gb\|EDX49093.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enteri... gi\|205347402, gi... - gi\|205347402\|gb\|EDZ34033.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enteri... gi\|205336447, gi... - gi\|205336447\|gb\|EDZ23211.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enteri... FLGG_SALTI - Flagellar basal-body rod protein flgG OS=Salmonella typhi GN=flgG PE=3 SV=1 FLGG_SALTI - Flagellar basal-body rod protein FlgG OS=Salmonella typhi GN=flgG PE=3 SV=1 FLGG_SALTY - Flagellar basal-body rod protein FlgG OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720... gi\|161614598, gi... - gi\|161614598\|ref\|YP_001588563.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. e... gi\|29137804, gi\|... - gi\|29142174\|ref\|NP_805516.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enter... gi\|16760055 - gi\|16760055\|ref\|NP_455672.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enter... gi\|213613179 - gi\|213613179\|ref\|ZP_03371005.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. en... gi\|213582039 - gi\|213582039\|ref\|ZP_03363865.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. en... gi\|213424682 - gi\|213424682\|ref\|ZP_03357447.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. en... gi\|207857313, gi... - gi\|207857313\|ref\|YP_002243964.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. e... gi\|224584317, gi... - gi\|224584317\|ref\|YP_002638115.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. e... gi\|214002344 - gi\|214002344\|ref\|ZP_03413079.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. en... gi\|213865503 - gi\|213865503\|ref\|ZP_03387622.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. en... gi\|213648928 - gi\|213648928\|ref\|ZP_03378981.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. en... gi\|194734396, gi... - gi\|194734396\|ref\|YP_002114178.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. e... gi\|194472223, gi... - gi\|194472223\|ref\|ZP_03078207.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. en... gi\|194408617, gi... - gi\|194450313\|ref\|YP_002045178.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. e... gi\|194405219, gi... - gi\|194446556\|ref\|YP_002040433.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. e... gi\|238911001 - gi\|238911001\|ref\|ZP_04654838.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. en... gi\|199602749, gi... - gi\|200390304\|ref\|ZP_03216915.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. en... gi\|197362757, gi... - gi\|197362757\|ref\|YP_002142394.1\| flagellar basal body rod protein FlgG [Salmonella enterica subsp. e... gi\|197262058, gi... - gi\|197262058\|ref\|ZP_03162132.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. en... gi\|197214734, gi... - gi\|197251031\|ref\|YP_002146864.1\| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. e...	249.0	[0..1]	[260..1]
gi\|189018758, gi... - gi\|189026183\|ref\|YP_001933955.1\| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu... gi\|15639944, gi\|... - gi\|3323281\|gb\|AAC65915.1\| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli... gi\|7443084 - pir\|\|C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete	249.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSLWIAKT GLNAQQTNMD VISNNLANVS TNGFKRQRAV FEDLMYQTIR QPGAQSSEQT  60
   61 MLPSGLQLGT GVRPVSTERI HTQGTFSETG NSKDVAIKGQ GFFQVQLPDG TTAYTRDGAF 120
  121 QLDGNGQLVT SSGYQVQPAI TVPANATELN IGRDGIVSVK VQGQAATNQI GQLTLTTFIN 180
  181 DSGLESMGEN LYLETASSGA PNETNPGLNG AGLLYQKYVE TSNVNVAEEL VSMIQTQRAY 240
  241 EINSKAISSS DQMLQKLTQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits