YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611164, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611164, gi|....

Description	E-value	Query Range	Subject Range
gi\|36785269, gi\|... - gi\|37525840\|ref\|NP_929184.1\| flagellar basal body rod modification protein [Photorhabdus luminescens...	224.0	[0..1]	[224..1]
gi\|24459276 - gi\|24459276\|gb\|AAL86629.1\| FlgD [Vibrio fischeri] gi\|197317217, gi... - gi\|197335727\|ref\|YP_002156701.1\| flagellar basal body rod modification protein [Vibrio fischeri MJ11... gi\|59480583, gi\|... - gi\|59712482\|ref\|YP_205258.1\| flagellar basal body rod modification protein [Vibrio fischeri ES114], ...	217.0	[0..2]	[223..6]
gi\|91225872, gi\|... - gi\|91225872\|ref\|ZP_01260841.1\| flagellar basal-body rod modification protein D [Vibrio alginolyticus...	215.0	[0..2]	[223..6]
gi\|27359822, gi\|... - gi\|27363706\|ref\|NP_759234.1\| flagellar basal body rod modification protein [Vibrio vulnificus CMCP6]... gi\|37197888, gi\|... - gi\|37679146\|ref\|NP_933755.1\| flagellar basal body rod modification protein [Vibrio vulnificus YJ016]...	214.0	[0..2]	[223..6]
gi\|75855313, gi\|... - gi\|75855313\|ref\|ZP_00762968.1\| COG1843: Flagellar hook capping protein [Vibrio sp. Ex25], gi\|2542301...	214.0	[0..2]	[223..6]
gi\|28897551, gi\|... - gi\|28897551\|ref\|NP_797156.1\| flagellar basal body rod modification protein [Vibrio parahaemolyticus ... gi\|5361007, gi\|2... - gi\|5361007\|gb\|AAD42914.1\|U12817_8 polar flagellar FlgD homolog [Vibrio parahaemolyticus], gi\|2880576... gi\|149746796, gi... - gi\|153839686\|ref\|ZP_01992353.1\| flagellar basal body rod modification protein [Vibrio parahaemolytic...	213.0	[0..2]	[223..6]
gi\|146316321, gi... - gi\|75827492\|ref\|ZP_00756927.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae O395], gi\|22... gi\|194537093, gi... - gi\|75820905\|ref\|ZP_00750943.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae V51], gi\|254... gi\|121631009, gi... - gi\|75816985\|ref\|ZP_00747441.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae V52], gi\|121... gi\|121586270, gi... - gi\|121586270\|ref\|ZP_01676060.1\| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80], ... gi\|124115842, gi... - gi\|153213643\|ref\|ZP_01948916.1\| basal-body rod modification protein FlgD [Vibrio cholerae 1587], gi\|... gi\|124119802, gi... - gi\|153221273\|ref\|ZP_01952288.1\| basal-body rod modification protein FlgD [Vibrio cholerae MAK 757], ... gi\|153817067, gi... - gi\|153817067\|ref\|ZP_01969734.1\| basal-body rod modification protein FlgD [Vibrio cholerae NCTC 8457]... gi\|229512080, gi... - gi\|229512080\|ref\|ZP_04401559.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|183179564, gi... - gi\|183179564\|ref\|ZP_02957775.1\| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3], gi... gi\|116190199, gi... - gi\|75831298\|ref\|ZP_00760563.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae MO10], gi\|25... gi\|75823916, gi\|... - gi\|75823916\|ref\|ZP_00753390.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae RC385], gi\|2... gi\|148875182, gi... - gi\|153829341\|ref\|ZP_01982008.1\| basal-body rod modification protein FlgD [Vibrio cholerae 623-39], g... gi\|149741046, gi... - gi\|153825362\|ref\|ZP_01978029.1\| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2], gi... gi\|227010210, gi... - gi\|227082322\|ref\|YP_002810873.1\| basal-body rod modification protein FlgD [Vibrio cholerae M66-2], g... gi\|229507725, gi... - gi\|229507725\|ref\|ZP_04397230.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229349023, gi... - gi\|229513842\|ref\|ZP_04403304.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229519216, gi... - gi\|229519216\|ref\|ZP_04408659.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229522147, gi... - gi\|229522147\|ref\|ZP_04411564.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229528797, gi... - gi\|229528797\|ref\|ZP_04418187.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|9656754, gi\|1... - gi\|9656754\|gb\|AAF95343.1\| basal-body rod modification protein FlgD [Vibrio cholerae O1 biovar El Tor... gi\|229607229, gi... - gi\|229607229\|ref\|YP_002877877.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae... gi\|11282646 - pir\|\|E82106 basal-body rod modification protein FlgD VC2198 [imported] - Vibrio cholerae (strain N16...	212.0	[0..2]	[223..6]
gi\|46912522, gi\|... - gi\|54308096\|ref\|YP_129116.1\| flagellar basal body rod modification protein [Photobacterium profundum...	211.0	[0..3]	[224..7]
gi\|84377157, gi\|... - gi\|84388090\|ref\|ZP_00990986.1\| flagellar basal body rod modification protein [Vibrio splendidus 12B0...	210.0	[0..2]	[223..7]
gi\|86146156, gi\|... - gi\|86146156\|ref\|ZP_01064482.1\| flagellar basal body rod modification protein [Vibrio sp. MED222], gi... gi\|218321822, gi... - gi\|218708803\|ref\|YP_002416424.1\| flagellar basal body rod modification protein [Vibrio splendidus LG...	210.0	[0..2]	[223..6]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTINDTSS ASSTQGLSST TAVEKNSSAD LQNQFLTLLV AQLKNQDPTN PMSNDQLVSQ  60
   61 LAQLNTVSGI EKLNTTLGSI SGQINNNQSM QASTLIGHSV MIPGKDILVG KETSTPFGVE 120
  121 LE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.346787
Match:	PF03963.5
Description:	No description for PF03963.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.518	0.231	flagellum	a.25.1	Ferritin-like
View	Download	0.532	0.122	flagellum	a.22.1	Histone-fold
View	Download	0.450	0.046	flagellum	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.465	0.018	flagellum	a.24.14	FAT domain of focal adhesion kinase
View	Download	0.483	N/A	N/A	a.25.1	Ferritin-like

Predicted Domain #2

Region A:
Residues: [123-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAAEVVTVTV NDATGKAVRT IELGTLSAGV HSFNWDSKLA DGTVAPDGAY TFTVAASTGG  60
   61 AQQVVQPLSY AVVNSVVRGD SGALLDLGLR GKATLDDVRQ IL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1xf1A
Description:	Structure of C5a peptidase- a key virulence factor from Streptococcus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits