YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611159, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611159, gi|....

Description	E-value	Query Range	Subject Range
gi\|22126397, gi\|... - gi\|22126397\|ref\|NP_669820.1\| flagellar biosynthesis protein [Yersinia pestis KIM], gi\|21959384\|gb\|AA... gi\|89105478 - gi\|89105478\|ref\|ZP_01177997.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|45436276, gi\|... - gi\|45441415\|ref\|NP_992954.1\| flagella synthesis protein FlgN [Yersinia pestis biovar Microtus str. 9...	139.0	[0..1]	[143..3]
gi\|186895108, gi... - gi\|186895108\|ref\|YP_001872220.1\| FlgN family protein [Yersinia pseudotuberculosis PB1/+], gi\|1866981... gi\|166010810, gi... - gi\|166010810\|ref\|ZP_02231708.1\| flagella synthesis protein FlgN [Yersinia pestis biovar Antiqua str.... gi\|166210734, gi... - gi\|166210734\|ref\|ZP_02236769.1\| flagella synthesis protein FlgN [Yersinia pestis biovar Antiqua str.... gi\|167055190, gi... - gi\|167425791\|ref\|ZP_02317544.1\| flagella synthesis protein FlgN [Yersinia pestis biovar Mediaevalis ... gi\|167469713 - gi\|167469713\|ref\|ZP_02334417.1\| flagella synthesis protein FlgN [Yersinia pestis FV-1] gi\|229902871, gi... - gi\|229902871\|ref\|ZP_04517988.1\| flagella synthesis protein FlgN [Yersinia pestis Nepal516], gi\|22968... gi\|165922186, gi... - gi\|165925982\|ref\|ZP_02221814.1\| flagella synthesis protein FlgN [Yersinia pestis biovar Orientalis s... gi\|108807167, gi... - gi\|108807167\|ref\|YP_651083.1\| flagella synthesis protein FlgN [Yersinia pestis Antiqua], gi\|10877908... gi\|165938695, gi... - gi\|165938695\|ref\|ZP_02227250.1\| flagella synthesis protein FlgN [Yersinia pestis biovar Orientalis s... gi\|51589287, gi\|... - gi\|51596005\|ref\|YP_070196.1\| flagella synthesis protein FlgN [Yersinia pseudotuberculosis IP 32953],... gi\|25324898 - pir\|\|AI0218 flagella synthesis protein FlgN [imported] - Yersinia pestis (strain CO92) gi\|15979819, gi\|... - gi\|218928916\|ref\|YP_002346791.1\| flagella synthesis protein FlgN [Yersinia pestis CO92], gi\|16122048... gi\|149292670, gi... - gi\|149366257\|ref\|ZP_01888292.1\| flagella synthesis protein FlgN [Yersinia pestis CA88-4125], gi\|1492... gi\|145598616, gi... - gi\|145598616\|ref\|YP_001162692.1\| flagella synthesis protein FlgN [Yersinia pestis Pestoides F], gi\|1... gi\|229701159, gi... - gi\|229896236\|ref\|ZP_04511406.1\| flagella synthesis protein FlgN [Yersinia pestis Pestoides A], gi\|22... Q66BU8\|Q66BU8_YERPS - Flagella synthesis protein FlgN - Yersinia pseudotuberculosis gi\|229897171, gi... - gi\|229897171\|ref\|ZP_04512327.1\| flagella synthesis protein FlgN [Yersinia pestis biovar Orientalis s... gi\|229688938, gi... - gi\|229897897\|ref\|ZP_04513048.1\| flagella synthesis protein FlgN [Yersinia pestis biovar Orientalis s...	138.0	[0..1]	[143..2]
FLGN_YEREN - Flagella synthesis protein flgN - Yersinia enterocolitica	136.0	[0..1]	[143..3]
gi\|77628868, gi\|... - gi\|77628868\|ref\|ZP_00791454.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	135.0	[0..1]	[143..3]
gi\|505362 - gi\|505362\|dbj\|BAA04979.1\| FlgN protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi\|505362\|dbj\|BA... - FlgN protein [Salmonella typhimurium]	131.0	[0..1]	[144..1]
gi\|77979942, gi\|... - gi\|77979942\|ref\|ZP_00835358.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	131.0	[0..1]	[143..3]
FLGN_PROMI - Flagella synthesis protein FlgN OS=Proteus mirabilis GN=flgN PE=3 SV=1 gi\|227163785, gi... - gi\|227356008\|ref\|ZP_03840399.1\| Flagella synthesis protein flgN [Proteus mirabilis ATCC 29906], gi\|2...	129.0	[0..1]	[143..2]
gi\|161614608, gi... - gi\|161614608\|ref\|YP_001588573.1\| hypothetical protein SPAB_02358 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=flgN] [protein=putative FlgK/FlgL export chaperone] [protein_id=YP_005236925.1] [location=comp... gi\|18026884\|gb\|A... - flagellar protein FlgN [Salmonella choleraesuis] FLGN_SALTY - Flagella synthesis protein flgN OS=Salmonella typhimurium GN=flgN PE=3 SV=1 FLGN_SALTI - Flagella synthesis protein flgN OS=Salmonella typhi GN=flgN PE=3 SV=1 FLGN_SALTI - Flagella synthesis protein FlgN OS=Salmonella typhi GN=flgN PE=3 SV=1 gi\|18026884 - gi\|18026884\|gb\|AAL55670.1\| flagellar protein FlgN [Salmonella choleraesuis] FLGN_SALTY - Flagella synthesis protein FlgN OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=f... gi\|29142182, gi\|... - gi\|29142182\|ref\|NP_805524.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enterica se... gi\|16760047 - gi\|16760047\|ref\|NP_455664.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enterica se... FLGN_SALTY - Flagella synthesis protein flgN OS=Salmonella typhimurium GN=flgN PE=3 SV=1 gi\|62127321, gi\|... - gi\|62179688\|ref\|YP_216105.1\| flagellar biosynthesis: belived to be export chaperone for FlgK and Flg... gi\|56128099, gi\|... - gi\|56413842\|ref\|YP_150917.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enterica se... gi\|206709124, gi... - gi\|207857321\|ref\|YP_002243972.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enteric... gi\|205353091, gi... - gi\|205353091\|ref\|YP_002226892.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enteric... gi\|197362765, gi... - gi\|197362765\|ref\|YP_002142402.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enteric... gi\|205341033, gi... - gi\|205341033\|gb\|EDZ27797.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enterica ser... gi\|224584325, gi... - gi\|224584325\|ref\|YP_002638123.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enteric...	128.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLQSILDQ LLSNLRELDA VLSEEQTLLC AGYINNIALQ QVTERKTSLL ATMQHLETRR  60
   61 HESESALTLQ APYDGIEPLS VYWQQVQELT RRLNNQNKHN GLLLSRHIAY TNEAINILKP 120
  121 RHGQGLYGPD GQSKGVTVGG RKITF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.221849
Match:	2fupA
Description:	Crystal structure of hypothetical protein PA3352 from Pseudomonas aeruginosa at 1.48 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits