YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49610708, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49610708, gi|....

Description	E-value	Query Range	Subject Range
gi\|83573926, gi\|... - gi\|83591012\|ref\|YP_431021.1\| hydrogenase 4 membrane subunit [Moorella thermoacetica ATCC 39073], gi\|...	187.0	[0..1]	[216..1]
HYFE_ECO57 - Hydrogenase-4 component E OS=Escherichia coli O157:H7 GN=hyfE PE=3 SV=1 gi\|238861465, gi... - gi\|238901650\|ref\|YP_002927446.1\| hydrogenase 4, membrane subunit [Escherichia coli BW2952], gi\|23886... gi\|30063862, gi\|... - gi\|30063862\|ref\|NP_838033.1\| hydrogenase 4 membrane subunit [Shigella flexneri 2a str. 2457T], gi\|30... gi\|251785810, gi... - gi\|251785810\|ref\|YP_003000114.1\| hypothetical protein B21_02339 [Escherichia coli BL21], gi\|24237808... gi\|15803008, gi\|... - gi\|15803008\|ref\|NP_289038.1\| hydrogenase 4 membrane subunit [Escherichia coli O157:H7 EDL933], gi\|12... gi\|253772623, gi... - gi\|254289220\|ref\|YP_003054968.1\| hydrogenase 4, membrane subunit [Escherichia coli BL21(DE3)], gi\|25... EG14213 - hydrogenase 4, membrane subunit / Hydrogenase 4 component E; membrane protein of Hyf electron transf... gi\|254162459, gi... - gi\|254162459\|ref\|YP_003045567.1\| hydrogenase 4, membrane subunit [Escherichia coli B str. REL606], g... gi\|89109291, gi\|... - gi\|89109291\|ref\|AP_003071.1\| hydrogenase 4, membrane subunit [Escherichia coli str. K-12 substr. W31... gi\|13362817, gi\|... - gi\|15832601\|ref\|NP_311374.1\| hydrogenase 4 membrane subunit [Escherichia coli O157:H7 str. Sakai], g... gi\|110806417, gi... - gi\|110806417\|ref\|YP_689937.1\| hydrogenase 4 membrane subunit [Shigella flexneri 5 str. 8401], gi\|110... gi\|193068296, gi... - gi\|75237768\|ref\|ZP_00721784.1\| COG4237: Hydrogenase 4 membrane component (E) [Escherichia coli E1100... gi\|192927637, gi... - gi\|75257292\|ref\|ZP_00728816.1\| COG4237: Hydrogenase 4 membrane component (E) [Escherichia coli E22],... gi\|75211452, gi\|... - gi\|75211452\|ref\|ZP_00711542.1\| COG4237: Hydrogenase 4 membrane component (E) [Escherichia coli B171]... EG14213 - hydrogenase 4, membrane subunit / Hydrogenase 4 component E; membrane protein of Hyf electron transf... gi\|75229188, gi\|... - gi\|75229188\|ref\|ZP_00715756.1\| COG4237: Hydrogenase 4 membrane component (E) [Escherichia coli B7A],... gi\|73856488, gi\|... - gi\|74313011\|ref\|YP_311430.1\| hydrogenase 4 membrane subunit [Shigella sonnei Ss046], gi\|73856488\|gb\|... gi\|124499658, gi... - gi\|124529798\|ref\|ZP_01700675.1\| NADH-ubiquinone oxidoreductase, chain 4L [Escherichia coli B], gi\|12... gi\|157155069, gi... - gi\|75187235\|ref\|ZP_00700502.1\| COG4237: Hydrogenase 4 membrane component (E) [Escherichia coli E2437... gi\|157161945, gi... - gi\|75196493\|ref\|ZP_00706563.1\| COG4237: Hydrogenase 4 membrane component (E) [Escherichia coli HS], ... gi\|24052900, gi\|... - gi\|24113813\|ref\|NP_708323.1\| hydrogenase 4 membrane subunit [Shigella flexneri 2a str. 301], gi\|2405... HYFE_SHIFL - Hydrogenase-4 component E OS=Shigella flexneri GN=hyfE PE=3 SV=1 gi\|189372310, gi... - gi\|189372310\|gb\|EDU90726.1\| hydrogenase-4 component E [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|168761091, gi... - gi\|189368438\|gb\|EDU86854.1\| hydrogenase-4 component E [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|169754159, gi... - gi\|170019231\|ref\|YP_001724185.1\| hydrogenase 4 membrane subunit [Escherichia coli ATCC 8739], gi\|169... gi\|189378679, gi... - gi\|189378679\|gb\|EDU97095.1\| hydrogenase-4 component E [Escherichia coli O157:H7 str. EC508], gi\|1687... gi\|209919961, gi... - gi\|209919961\|ref\|YP_002294045.1\| hydrogenase 4 membrane subunit [Escherichia coli SE11], gi\|20991322... HYFE_ECOLI - Hydrogenase-4 component E (EC 1.-.-.-) - Escherichia coli gi\|170082095, gi... - gi\|170082095\|ref\|YP_001731415.1\| hydrogenase 4, membrane subunit [Escherichia coli str. K-12 substr.... gi\|218555011, gi... - gi\|218555011\|ref\|YP_002387924.1\| hydrogenase 4 membrane subunit [Escherichia coli IAI1], gi\|21836177... gi\|217327425, gi... - gi\|217327425\|ref\|ZP_03443508.1\| hydrogenase 4, membrane subunit [Escherichia coli O157:H7 str. TW145... gi\|218370929, gi... - gi\|218700943\|ref\|YP_002408572.1\| hydrogenase 4 membrane subunit [Escherichia coli IAI39], gi\|2183709... gi\|218352844, gi... - gi\|218696112\|ref\|YP_002403779.1\| hydrogenase 4 membrane subunit [Escherichia coli 55989], gi\|2183528...	186.0	[0..1]	[216..1]
gi\|81242014, gi\|... - gi\|82777866\|ref\|YP_404215.1\| hydrogenase 4 membrane subunit [Shigella dysenteriae Sd197], gi\|8124201...	186.0	[0..1]	[216..1]
gi\|91780245, gi\|... - gi\|91780245\|ref\|YP_555452.1\| hypothetical protein Bxe_C0177 [Burkholderia xenovorans LB400], gi\|9169...	186.0	[0..4]	[215..6]
gi\|188489738, gi... - gi\|75515826\|ref\|ZP_00737961.1\| COG4237: Hydrogenase 4 membrane component (E) [Escherichia coli 53638...	186.0	[0..1]	[216..1]
gi\|83586866, gi\|... - gi\|83586866\|ref\|ZP_00925497.1\| COG4237: Hydrogenase 4 membrane component (E) [Escherichia coli 101-1...	185.0	[0..1]	[216..1]
gi\|187731081, gi... - gi\|75178087\|ref\|ZP_00698146.1\| COG4237: Hydrogenase 4 membrane component (E) [Shigella boydii BS512]... gi\|82544934, gi\|... - gi\|82544934\|ref\|YP_408881.1\| hydrogenase 4 membrane subunit [Shigella boydii Sb227], gi\|81246345\|gb\|...	185.0	[0..1]	[216..1]
gi\|52212587, gi\|... - gi\|53722173\|ref\|YP_111158.1\| hypothetical protein BPSS1145 [Burkholderia pseudomallei K96243], gi\|52... gi\|134245139, gi... - gi\|134283390\|ref\|ZP_01770090.1\| putative hydrogenase, membrane subunit [Burkholderia pseudomallei 30... gi\|167723609 - gi\|167723609\|ref\|ZP_02406845.1\| hypothetical protein BpseD_31625 [Burkholderia pseudomallei DM98] gi\|167914905 - gi\|167914905\|ref\|ZP_02501996.1\| hypothetical protein Bpse112_30731 [Burkholderia pseudomallei 112] gi\|235000119, gi... - gi\|237507914\|ref\|ZP_04520629.1\| hydrogenase-4, E subunit [Burkholderia pseudomallei MSHR346], gi\|235... gi\|167922749 - gi\|167922749\|ref\|ZP_02509840.1\| hypothetical protein BpseBC_29612 [Burkholderia pseudomallei BCC215] gi\|217418481, gi... - gi\|217418481\|ref\|ZP_03449988.1\| putative hydrogenase, membrane subunit [Burkholderia pseudomallei 57...	184.0	[0..1]	[215..1]
gi\|194432182, gi... - gi\|83570701\|ref\|ZP_00922144.1\| COG4237: Hydrogenase 4 membrane component (E) [Shigella dysenteriae 1...	184.0	[0..1]	[216..1]
gi\|67683138, gi\|... - gi\|90294700\|ref\|ZP_01214292.1\| hypothetical protein Bpse17_02000585 [Burkholderia pseudomallei 1710a... gi\|67756228, gi\|... - gi\|67756228\|ref\|ZP_00495114.1\| COG4237: Hydrogenase 4 membrane component (E) [Burkholderia pseudomal... gi\|76818420, gi\|... - gi\|76818420\|ref\|YP_335268.1\| hydrogenase 4 membrane component [Burkholderia pseudomallei 1710b], gi\|... gi\|167898187 - gi\|167898187\|ref\|ZP_02485589.1\| Hydrogenase 4 membrane component [Burkholderia pseudomallei 7894] gi\|254300490, gi... - gi\|83679827\|ref\|ZP_00941537.1\| COG4237: Hydrogenase 4 membrane component (E) [Burkholderia pseudomal...	184.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGSLIVNNL AGLMMFTSLM VIGVKRPTAS CWLYSLQALI LVLLFLTLSY TLDAHELRTW  60
   61 AISAFFTKVV LVPAILYFAF RTMRDPAHEG SVISLPVLMI LAAAIVILCW FVAEPVQLP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLATLKPALA VSLGHFMVGL LCIVTQRNIL KQVFGYCLME NGSHLTLALL ASKAPELVEI  60
   61 GIATDAIFAV IIMTILARKI WRTLNTLSVD QLTALKG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.259637
Match:	PF00420.15
Description:	No description for PF00420.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits