YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49610653, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49610653, gi|....

Description	E-value	Query Range	Subject Range
gi\|194448261, gi... - gi\|194448261\|ref\|YP_002048554.1\| hypothetical protein SeHA_C4937 [Salmonella enterica subsp. enteric... gi\|194445659, gi... - gi\|194445659\|ref\|YP_002043773.1\| hypothetical protein SNSL254_A4885 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=yjiX] [protein=putative cytoplasmic protein] [protein_id=YP_005240871.1] [location=complement(... gi\|194711350, gi... - gi\|194735848\|ref\|YP_002117448.1\| hypothetical protein SeSA_A4784 [Salmonella enterica subsp. enteric... gi\|194472596, gi... - gi\|194472596\|ref\|ZP_03078580.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205348785, gi... - gi\|205348785\|gb\|EDZ35416.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205337063, gi... - gi\|205337063\|gb\|EDZ23827.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168821015, gi... - gi\|205342296\|gb\|EDZ29060.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168464556, gi... - gi\|195632654\|gb\|EDX51108.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167991330, gi... - gi\|205330412\|gb\|EDZ17176.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167551211, gi... - gi\|205323828\|gb\|EDZ11667.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168234662, gi... - gi\|197291992\|gb\|EDY31342.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168232887, gi... - gi\|205333015\|gb\|EDZ19779.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|238910693 - gi\|238910693\|ref\|ZP_04654530.1\| hypothetical protein SentesTe_06083 [Salmonella enterica subsp. ente... gi\|161617837, gi... - gi\|161617837\|ref\|YP_001591802.1\| hypothetical protein SPAB_05701 [Salmonella enterica subsp. enteric... gi\|213609232 - gi\|213609232\|ref\|ZP_03369058.1\| hypothetical protein SentesTyp_01298 [Salmonella enterica subsp. ent... gi\|62182953, gi\|... - gi\|62182953\|ref\|YP_219370.1\| hypothetical protein SC4383 [Salmonella enterica subsp. enterica serova... gi\|213584465 - gi\|213584465\|ref\|ZP_03366291.1\| hypothetical protein SentesTyph_25870 [Salmonella enterica subsp. en... gi\|56416315, gi\|... - gi\|56416315\|ref\|YP_153390.1\| hypothetical protein SPA4352 [Salmonella enterica subsp. enterica serov... gi\|213864759 - gi\|213864759\|ref\|ZP_03386878.1\| hypothetical protein SentesT_33235 [Salmonella enterica subsp. enter... gi\|213648573 - gi\|213648573\|ref\|ZP_03378626.1\| hypothetical protein SentesTy_15584 [Salmonella enterica subsp. ente... gi\|213051849 - gi\|213051849\|ref\|ZP_03344727.1\| hypothetical protein Salmoneentericaenterica_02288 [Salmonella enter... gi\|213026742 - gi\|213026742\|ref\|ZP_03341189.1\| hypothetical protein Salmonelentericaenterica_31560 [Salmonella ente... gi\|213428395 - gi\|213428395\|ref\|ZP_03361145.1\| hypothetical protein SentesTyphi_24334 [Salmonella enterica subsp. e... gi\|213421496 - gi\|213421496\|ref\|ZP_03354562.1\| hypothetical protein Salmonentericaenterica_28719 [Salmonella enteri... gi\|204323745, gi... - gi\|204927080\|ref\|ZP_03218282.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|200387855, gi... - gi\|200387855\|ref\|ZP_03214467.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|207859660, gi... - gi\|207859660\|ref\|YP_002246311.1\| hypothetical protein SEN4296 [Salmonella enterica subsp. enterica s... gi\|205275035, gi... - gi\|205355254\|ref\|YP_002229055.1\| hypothetical protein SG4361 [Salmonella enterica subsp. enterica se... gi\|197242989, gi... - gi\|197264734\|ref\|ZP_03164808.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197213882, gi... - gi\|197250179\|ref\|YP_002149483.1\| hypothetical protein SeAg_B4858 [Salmonella enterica subsp. enteric... gi\|197940103, gi... - gi\|198245587\|ref\|YP_002218407.1\| hypothetical protein SeD_A4944 [Salmonella enterica subsp. enterica... gi\|197096715, gi... - gi\|197365238\|ref\|YP_002144875.1\| hypothetical protein SSPA4041 [Salmonella enterica subsp. enterica ... gi\|16767775, gi\|... - gi\|16767775\|ref\|NP_463390.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16423098\|... gi\|25513444, gi\|... - gi\|25513444\|pir\|\|AI1069 conserved hypothetical protein STY4889 [imported] - Salmonella enterica subs... gi\|16763337 - gi\|16763337\|ref\|NP_458954.1\| hypothetical protein STY4889 [Salmonella enterica subsp. enterica serov... gi\|29140454, gi\|... - gi\|29144815\|ref\|NP_808157.1\| hypothetical protein t4581 [Salmonella enterica subsp. enterica serovar... gi\|213999644 - gi\|213999644\|ref\|ZP_03410379.1\| hypothetical protein Salmonellentericaenterica_02577 [Salmonella ent... gi\|213982203 - gi\|213982203\|ref\|ZP_03409462.1\| hypothetical protein Salmonellaentericaenterica_50721 [Salmonella en... gi\|224470882, gi... - gi\|224586354\|ref\|YP_002640153.1\| hypothetical protein SPC_4668 [Salmonella enterica subsp. enterica ...	113.0	[0..2]	[68..1]
gi\|150962994, gi... - gi\|94413092\|ref\|ZP_01292984.1\| hypothetical protein PaerP_01005099 [Pseudomonas aeruginosa PA7], gi\|... gi\|107099731 - gi\|107099731\|ref\|ZP_01363649.1\| hypothetical protein PaerPA_01000749 [Pseudomonas aeruginosa PACS2] gi\|15599801, gi\|... - gi\|9950855\|gb\|AAG07993.1\|AE004874_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|218773930, gi... - gi\|218893702\|ref\|YP_002442571.1\| hypothetical protein PLES_49901 [Pseudomonas aeruginosa LESB58], gi... gi\|11348218 - pir\|\|G83070 conserved hypothetical protein PA4605 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116052747, gi... - gi\|46165051\|ref\|ZP_00135932.2\| COG2879: Uncharacterized small protein [Pseudomonas aeruginosa UCBPP-...	112.0	[0..2]	[68..1]
gi\|192956584, gi... - gi\|75235075\|ref\|ZP_00719331.1\| COG2879: Uncharacterized small protein [Escherichia coli E110019], gi... gi\|75242221, gi\|... - gi\|75242221\|ref\|ZP_00725983.1\| COG2879: Uncharacterized small protein [Escherichia coli F11], gi\|191... gi\|75212095, gi\|... - gi\|75212095\|ref\|ZP_00712135.1\| COG2879: Uncharacterized small protein [Escherichia coli B171], gi\|19... gi\|75227787, gi\|... - gi\|75227787\|ref\|ZP_00714510.1\| COG2879: Uncharacterized small protein [Escherichia coli B7A], gi\|191... gi\|74314778, gi\|... - gi\|74314778\|ref\|YP_313197.1\| hypothetical protein SSON_4486 [Shigella sonnei Ss046], gi\|73858255\|gb\|... gi\|82779606, gi\|... - gi\|82779606\|ref\|YP_405955.1\| hypothetical protein SDY_4606 [Shigella dysenteriae Sd197], gi\|81243754... gi\|75258424, gi\|... - gi\|75258424\|ref\|ZP_00729855.1\| COG2879: Uncharacterized small protein [Escherichia coli E22], gi\|193... gi\|75515534, gi\|... - gi\|75515534\|ref\|ZP_00737691.1\| COG2879: Uncharacterized small protein [Escherichia coli 53638], gi\|1... gi\|75189063, gi\|... - gi\|75189063\|ref\|ZP_00702330.1\| COG2879: Uncharacterized small protein [Escherichia coli E24377A], gi... gi\|75198159, gi\|... - gi\|75198159\|ref\|ZP_00708229.1\| COG2879: Uncharacterized small protein [Escherichia coli HS], gi\|1571... gi\|194437719, gi... - gi\|83586630\|ref\|ZP_00925262.1\| COG2879: Uncharacterized small protein [Escherichia coli 101-1], gi\|1... gi\|187732680, gi... - gi\|75179310\|ref\|ZP_00699314.1\| COG2879: Uncharacterized small protein [Shigella boydii BS512], gi\|18... YJIX_ECOL6 - Uncharacterized protein yjiX OS=Escherichia coli O6 GN=yjiX PE=4 SV=1 gi\|91214004, gi\|... - gi\|91214004\|ref\|YP_543990.1\| hypothetical protein UTI89_C5056 [Escherichia coli UTI89], gi\|91075578\|... gi\|13364790, gi\|... - gi\|15834566\|ref\|NP_313339.1\| hypothetical protein ECs5312 [Escherichia coli O157:H7 str. Sakai], gi\|... YJIX_ECOLI - Hypothetical protein yjiX - Escherichia coli gi\|110644788, gi... - gi\|110644788\|ref\|YP_672518.1\| hypothetical protein ECP_4681 [Escherichia coli 536], gi\|110346380\|gb\|... gi\|110808131, gi... - gi\|110808131\|ref\|YP_691651.1\| hypothetical protein SFV_4372 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|170122642, gi... - gi\|170768538\|ref\|ZP_02902991.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|170519326, gi... - gi\|170681608\|ref\|YP_001746803.1\| hypothetical protein EcSMS35_4893 [Escherichia coli SMS-3-5], gi\|17... gi\|195937625 - gi\|195937625\|ref\|ZP_03083007.1\| hypothetical protein EscherichcoliO157_14447 [Escherichia coli O157:... gi\|194416901, gi... - gi\|194434838\|ref\|ZP_03067086.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|208812639, gi... - gi\|208812639\|ref\|ZP_03253968.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208729452, gi... - gi\|208809651\|ref\|ZP_03251988.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|209400629, gi... - gi\|209400629\|ref\|YP_002273874.1\| hypothetical protein ECH74115_5865 [Escherichia coli O157:H7 str. E... gi\|208821619, gi... - gi\|208821619\|ref\|ZP_03261939.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|189357891, gi... - gi\|189357891\|gb\|EDU76310.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168749488, gi... - gi\|188016175\|gb\|EDU54297.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189364053, gi... - gi\|189364053\|gb\|EDU82472.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168760598, gi... - gi\|189368988\|gb\|EDU87404.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168781640, gi... - gi\|189000716\|gb\|EDU69702.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|124498504, gi... - gi\|124531572\|ref\|ZP_01701803.1\| protein of unknown function DUF466 [Escherichia coli B], gi\|12449850... gi\|187770245, gi... - gi\|187770245\|gb\|EDU34089.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... YJIX_SHIFL - Uncharacterized protein YjiX OS=Shigella flexneri GN=yjiX PE=4 SV=1 gi\|170021697, gi... - gi\|170021697\|ref\|YP_001726651.1\| hypothetical protein EcolC_3713 [Escherichia coli ATCC 8739], gi\|16... gi\|24115570, gi\|... - gi\|24115570\|ref\|NP_710080.1\| hypothetical protein SF4371 [Shigella flexneri 2a str. 301], gi\|2405490... gi\|189375103, gi... - gi\|189375103\|gb\|EDU93519.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|218435117, gi... - gi\|218708020\|ref\|YP_002415539.1\| hypothetical protein ECUMN_4962 [Escherichia coli UMN026], gi\|21843... gi\|215267736, gi... - gi\|215489664\|ref\|YP_002332095.1\| hypothetical protein E2348C_4649 [Escherichia coli O127:H6 str. E23... gi\|209921809, gi... - gi\|209921809\|ref\|YP_002295893.1\| hypothetical protein ECSE_4618 [Escherichia coli SE11], gi\|20991506... gi\|218550382, gi... - gi\|218550382\|ref\|YP_002384173.1\| hypothetical protein EFER_3074 [Escherichia fergusonii ATCC 35469],... gi\|217326024, gi... - gi\|217326024\|ref\|ZP_03442108.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218368299, gi... - gi\|218561530\|ref\|YP_002394443.1\| hypothetical protein ECS88_4974 [Escherichia coli S88], gi\|21836829... gi\|218363646, gi... - gi\|218556877\|ref\|YP_002389791.1\| hypothetical protein ECIAI1_4563 [Escherichia coli IAI1], gi\|218363... gi\|218703045, gi... - gi\|218703045\|ref\|YP_002410674.1\| hypothetical protein ECIAI39_4823 [Escherichia coli IAI39], gi\|2183... gi\|218692736, gi... - gi\|218692736\|ref\|YP_002400948.1\| hypothetical protein ECED1_5218 [Escherichia coli ED1a], gi\|2184303... YJIX_ECOL6 - Uncharacterized protein YjiX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yjiX ... gi\|30065584, gi\|... - gi\|30065584\|ref\|NP_839755.1\| hypothetical protein S4641 [Shigella flexneri 2a str. 2457T], gi\|300438... YJIX_ECO57 - Uncharacterized protein YjiX OS=Escherichia coli O157:H7 GN=yjiX PE=4 SV=1 EG12585 - DUF466 family protein / DUF466 family protein, function unknown; may be involved with oligopeptide u... gi\|227885164, gi... - gi\|227885164\|ref\|ZP_04002969.1\| protein of hypothetical function DUF466 [Escherichia coli 83972], gi... gi\|226902001, gi... - gi\|237704089\|ref\|ZP_04534570.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|238903441, gi... - gi\|238903441\|ref\|YP_002929237.1\| hypothetical protein BWG_4046 [Escherichia coli BW2952], gi\|2388604... gi\|251787594, gi... - gi\|251787594\|ref\|YP_003001898.1\| hypothetical protein B21_04185 [Escherichia coli BL21], gi\|24237986... EG12585 - DUF466 family protein / DUF466 family protein, function unknown; may be involved with oligopeptide u... gi\|253980330, gi... - gi\|254291021\|ref\|YP_003056771.1\| hypothetical protein ECD_04219 [Escherichia coli BL21(DE3)], gi\|253... gi\|81248107, gi\|... - gi\|82546696\|ref\|YP_410643.1\| hypothetical protein SBO_4401 [Shigella boydii Sb227], gi\|81248107\|gb\|A... gi\|226840471, gi... - gi\|254037365\|ref\|ZP_04871442.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684047... gi\|85677093, gi\|... - gi\|89111062\|ref\|AP_004842.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|254164270, gi... - gi\|254164270\|ref\|YP_003047380.1\| hypothetical protein ECB_04219 [Escherichia coli B str. REL606], gi... gi\|254595749, gi... - gi\|254796349\|ref\|YP_003081186.1\| hypothetical protein ECSP_5435 [Escherichia coli O157:H7 str. TW143...	112.0	[0..2]	[68..1]
gi\|23105550, gi\|... - gi\|67154320\|ref\|ZP_00416065.1\| Protein of unknown function DUF466 [Azotobacter vinelandii AvOP], ref... gi\|226721064, gi... - gi\|67154320\|ref\|ZP_00416065.1\| Protein of unknown function DUF466 [Azotobacter vinelandii AvOP], gi\|...	111.0	[0..2]	[68..1]
gi\|194555486, gi... - gi\|84323363\|ref\|ZP_00971436.1\| COG2879: Uncharacterized small protein [Pseudomonas aeruginosa 2192],...	111.0	[0..2]	[68..1]
gi\|70732656, gi\|... - gi\|70732656\|ref\|YP_262419.1\| hypothetical protein PFL_5351 [Pseudomonas fluorescens Pf-5], gi\|683469...	111.0	[0..2]	[68..1]
gi\|126359973, gi... - gi\|167035625\|ref\|YP_001670856.1\| hypothetical protein PputGB1_4634 [Pseudomonas putida GB-1], gi\|166... tr\|I7C0S1\|I7C0S1... - Uncharacterized protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_0813 PE=4 SV=1 tr\|E4R4X6\|E4R4X6... - Uncharacterized protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4336 PE=4 SV=1 gi\|26991324, gi\|... - gi\|26991324\|ref\|NP_746749.1\| hypothetical protein PP_4640 [Pseudomonas putida KT2440], gi\|24986384\|g... gi\|82714843, gi\|... - gi\|82738066\|ref\|ZP_00900906.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714843\|g...	111.0	[0..2]	[68..1]
gi\|213966762, gi... - gi\|213966762\|ref\|ZP_03394913.1\| hypothetical protein PSPTOT1_0520 [Pseudomonas syringae pv. tomato T... gi\|237801449 - gi\|237801449\|ref\|ZP_04589910.1\| hypothetical protein Psyrpo1_21646 [Pseudomonas syringae pv. oryzae ... gi\|71555408, gi\|... - gi\|71734855\|ref\|YP_276446.1\| hypothetical protein PSPPH_4329 [Pseudomonas syringae pv. phaseolicola ... gi\|115265652 - gi\|115265652\|dbj\|BAF32913.1\| conserved hypothetical protein [Pseudomonas syringae pv. phaseolicola] gi\|115265598 - gi\|115265598\|dbj\|BAF32860.1\| conserved hypothetical protein [Pseudomonas syringae pv. actinidiae]	110.0	[0..2]	[68..1]
gi\|25497290 - gi\|25497290\|pir\|\|C86134 hypothetical protein yjiX [imported] - Escherichia coli (strain O157:H7, su... gi\|12519372, gi\|... - gi\|15804926\|ref\|NP_290968.1\| hypothetical protein Z5952 [Escherichia coli O157:H7 EDL933], gi\|125193...	110.0	[0..2]	[68..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFGNLGKAG KYLGQAARML VGMPDYDTYV QHMQTNHPDK PAMTYEEFFR ERQQARYGGD  60
   61 GKGGMRCC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.769551
Match:	PF04328.4
Description:	No description for PF04328.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.769	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.760	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.755	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.667	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.651	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.625	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits