YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50119780, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50119780, gi|....

Description	E-value	Query Range	Subject Range
gi\|153947960, gi... - gi\|77632095\|ref\|ZP_00794681.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pseudo...	159.0	[0..1]	[144..1]
gi\|77974742 - gi\|77974742\|ref\|ZP_00830281.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia freder...	159.0	[0..1]	[144..1]
gi\|75241604 - gi\|75241604\|ref\|ZP_00725441.1\| COG2867: Oligoketide cyclase/lipid transport protein [Escherichia col...	159.0	[0..1]	[145..5]
gi\|191171364, gi... - gi\|191171364\|ref\|ZP_03032913.1\| polyketide cyclase/dehydrase family protein [Escherichia coli F11], ... gi\|117624839, gi... - gi\|117624839\|ref\|YP_853752.1\| hypothetical protein APECO1_3916 [Escherichia coli APEC O1], gi\|115513... gi\|237706793, gi... - gi\|237706793\|ref\|ZP_04537274.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|110344371, gi... - gi\|110642779\|ref\|YP_670509.1\| hypothetical protein ECP_2619 [Escherichia coli 536], gi\|110344371\|gb\|... gi\|227834825, gi... - gi\|227888185\|ref\|ZP_04005990.1\| possibe oligoketide cyclase/lipid transport protein [Escherichia col... gi\|91211954, gi\|... - gi\|91211954\|ref\|YP_541940.1\| hypothetical protein UTI89_C2953 [Escherichia coli UTI89], gi\|91073528\|... PAST_ECOL6 - Persistence and stress-resistance toxin PasT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|215487968, gi... - gi\|215487968\|ref\|YP_002330399.1\| hypothetical protein E2348C_2907 [Escherichia coli O127:H6 str. E23... gi\|218366307, gi... - gi\|218559538\|ref\|YP_002392451.1\| hypothetical protein ECS88_2805 [Escherichia coli S88], gi\|21836630...	158.0	[0..1]	[145..14]
gi\|21959995, gi\|... - gi\|22126954\|ref\|NP_670377.1\| hypothetical protein y3078 [Yersinia pestis KIM], gi\|21959995\|gb\|AAM866... gi\|45435746, gi\|... - gi\|45440888\|ref\|NP_992427.1\| hypothetical protein YP_1054 [Yersinia pestis biovar Microtus str. 9100...	158.0	[0..1]	[144..35]
gi\|229697403, gi... - gi\|229841037\|ref\|ZP_04461196.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229689488, gi... - gi\|229843141\|ref\|ZP_04463287.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|229893979, gi... - gi\|229893979\|ref\|ZP_04509165.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229703864\|gb\|EEO... gi\|149291272, gi... - gi\|149366898\|ref\|ZP_01888932.1\| hypothetical protein YPE_2152 [Yersinia pestis CA88-4125], gi\|149291... gi\|165924650, gi... - gi\|165924650\|ref\|ZP_02220482.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Orient... gi\|145211556, gi... - gi\|145599860\|ref\|YP_001163936.1\| hypothetical protein YPDSF_2595 [Yersinia pestis Pestoides F], gi\|1... gi\|229903497, gi... - gi\|229903497\|ref\|ZP_04518610.1\| conserved protein [Yersinia pestis Nepal516], gi\|229679267\|gb\|EEO753... gi\|77636439, gi\|... - gi\|77636439\|ref\|ZP_00798513.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pestis... gi\|89105213, gi\|... - gi\|89105213\|ref\|ZP_01177737.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pestis... gi\|108806577, gi... - gi\|108806577\|ref\|YP_650493.1\| hypothetical protein YPA_0580 [Yersinia pestis Antiqua], gi\|108778490\|... Q66DB3\|Q66DB3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|166211450, gi... - gi\|166211450\|ref\|ZP_02237485.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Antiqu... gi\|165989480, gi... - gi\|166011532\|ref\|ZP_02232430.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Antiqu... gi\|167419468, gi... - gi\|167419468\|ref\|ZP_02311221.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Orient... gi\|167400072, gi... - gi\|167400072\|ref\|ZP_02305590.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Antiqu... gi\|51595480, gi\|... - gi\|51595480\|ref\|YP_069671.1\| hypothetical protein YPTB1136 [Yersinia pseudotuberculosis IP 32953], g... gi\|170025201, gi... - gi\|170025201\|ref\|YP_001721706.1\| hypothetical protein YPK_2979 [Yersinia pseudotuberculosis YPIII], ... gi\|25348179 - pir\|\|AF0135 conserved hypothetical protein YPO1102 [imported] - Yersinia pestis (strain CO92) gi\|167057147, gi... - gi\|167424298\|ref\|ZP_02316051.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Mediae... gi\|115346881, gi... - gi\|218928270\|ref\|YP_002346145.1\| hypothetical protein YPO1102 [Yersinia pestis CO92], gi\|16121402\|re... gi\|186894533, gi... - gi\|186894533\|ref\|YP_001871645.1\| hypothetical protein YPTS_1213 [Yersinia pseudotuberculosis PB1/+],...	158.0	[0..1]	[144..1]
gi\|238796718, gi... - gi\|77963357\|ref\|ZP_00827167.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia mollar...	158.0	[0..1]	[142..1]
gi\|85711976, gi\|... - gi\|85711976\|ref\|ZP_01043030.1\| Oligoketide cyclase/lipid transport protein, putative [Idiomarina bal...	157.0	[0..1]	[143..1]
gi\|77958608 - gi\|77958608\|ref\|ZP_00822639.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia bercov...	157.0	[0..1]	[142..1]
gi\|209913352, gi... - gi\|209920093\|ref\|YP_002294177.1\| hypothetical protein ECSE_2902 [Escherichia coli SE11], gi\|20991335... gi\|75233812 - gi\|75233812\|ref\|ZP_00718289.1\| COG2867: Oligoketide cyclase/lipid transport protein [Escherichia col... gi\|75175417, gi\|... - gi\|75175417\|ref\|ZP_00695644.1\| COG2867: Oligoketide cyclase/lipid transport protein [Shigella boydii... gi\|83569989 - gi\|83569989\|ref\|ZP_00921437.1\| COG2867: Oligoketide cyclase/lipid transport protein [Shigella dysent... gi\|157076754, gi... - gi\|157154724\|ref\|YP_001463938.1\| hypothetical protein EcE24377A_2903 [Escherichia coli E24377A], gi\|...	157.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKISRSALV PFSAEQMYKL VNDVSSYPAF LPGCTGSRVL SSSEEGMIAA VDVSKAGISK  60
   61 TFTTRNTLTH NQNINMQLVD GPFRQLSGDW HFTPLSADAC KVELHLEFEF TNALIELAFG 120
  121 KVFKELAGNM VQAFTQRAKE VYSVRNAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1t17A
Description:	Solution Structure of the 18 kDa Protein CC1736 from Caulobacter crescentus: The Northeast Structural Genomics Consortium Target CcR19
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits