YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50119580, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50119580, gi|....

Description	E-value	Query Range	Subject Range
gi\|25502154 - gi\|25502154\|pir\|\|B95955 hypothetical protein with amino acid permeases signature SMb21330 [imported]... gi\|16264654, gi\|... - gi\|16264654\|ref\|NP_437446.1\| hypothetical protein with amino acid permeases signature [Sinorhizobium...	99.0	[0..3]	[73..13]
gi\|26250828, gi\|... - gi\|26250828\|ref\|NP_756868.1\| putative stress-response protein [Escherichia coli CFT073], gi\|26111259... gi\|91075142, gi\|... - gi\|91213568\|ref\|YP_543554.1\| putative stress-response protein [Escherichia coli UTI89], gi\|91075142\|... gi\|226901514, gi... - gi\|237703602\|ref\|ZP_04534083.1\| yjbJ [Escherichia sp. 3_2_53FAA], gi\|226901514\|gb\|EEH87773.1\| yjbJ [...	91.0	[0..3]	[73..1]
Y5606_RHIME - UPF0337 protein RB0906 OS=Rhizobium meliloti (strain 1021) GN=RB0906 PE=3 SV=2 Y5606_RHIME - UPF0337 protein RB0906 OS=Rhizobium meliloti GN=RB0906 PE=3 SV=2	91.0	[0..5]	[73..1]
Y631_ERWCT - UPF0337 protein ECA0631 OS=Erwinia carotovora subsp. atroseptica GN=ECA0631 PE=3 SV=2 Y631_PECAS - UPF0337 protein ECA0631 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA0631 ...	90.0	[0..5]	[73..1]
gi\|205330208, gi... - gi\|205330208\|gb\|EDZ16972.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|205334303, gi... - gi\|205334303\|gb\|EDZ21067.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... YJBJ_SALTI - UPF0337 protein YjbJ OS=Salmonella typhi GN=yjbJ PE=3 SV=1 gi\|205359252, gi... - gi\|205359252\|ref\|ZP_02668569.2\| conserved domain protein [Salmonella enterica subsp. enterica serova... YJBJ_SALTY - UPF0337 protein YjbJ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbJ PE=3 SV... gi\|206711197, gi... - gi\|207859394\|ref\|YP_002246045.1\| putative stress-response protein [Salmonella enterica subsp. enteri... gi\|213021434 - gi\|213021434\|ref\|ZP_03335881.1\| putative stress-response protein [Salmonella enterica subsp. enteric... gi\|213421308 - gi\|213421308\|ref\|ZP_03354374.1\| putative stress-response protein [Salmonella enterica subsp. enteric... gi\|198243326, gi... - gi\|198243326\|ref\|YP_002218135.1\| hypothetical protein SeD_A4634 [Salmonella enterica subsp. enterica... gi\|199604926, gi... - gi\|200387828\|ref\|ZP_03214440.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|29140046, gi\|... - gi\|29144408\|ref\|NP_807750.1\| putative stress-response protein [Salmonella enterica subsp. enterica s... gi\|205274793, gi... - gi\|205355012\|ref\|YP_002228813.1\| putative stress-response protein [Salmonella enterica subsp. enteri... gi\|16762921 - gi\|16762921\|ref\|NP_458538.1\| putative stress-response protein [Salmonella enterica subsp. enterica s... gi\|205357252, gi... - gi\|205357252\|ref\|ZP_02346289.2\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|194469610, gi... - gi\|194469610\|ref\|ZP_03075594.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197249777, gi... - gi\|197249777\|ref\|YP_002149154.1\| hypothetical protein SeAg_B4497 [Salmonella enterica subsp. enteric... gi\|197261601, gi... - gi\|197261601\|ref\|ZP_03161675.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197364967, gi... - gi\|197364967\|ref\|YP_002144604.1\| putative stress-response protein [Salmonella enterica subsp. enteri... YJBJ_SALTY - UPF0337 protein yjbJ OS=Salmonella typhimurium GN=yjbJ PE=3 SV=1 gi\|168466922, gi... - gi\|195630610\|gb\|EDX49222.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|205342167, gi... - gi\|205342167\|gb\|EDZ28931.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|194442266, gi... - gi\|194442266\|ref\|YP_002043491.1\| hypothetical protein SNSL254_A4583 [Salmonella enterica subsp. ente... gi\|194448471, gi... - gi\|194448471\|ref\|YP_002048231.1\| putative stress-response protein [Salmonella enterica subsp. enteri... gi\|62182689, gi\|... - gi\|62182689\|ref\|YP_219106.1\| putative stress-response protein [Salmonella enterica subsp. enterica s... gi\|56416040, gi\|... - gi\|56416040\|ref\|YP_153115.1\| putative stress-response protein [Salmonella enterica subsp. enterica s... gi\|213857487 - gi\|213857487\|ref\|ZP_03384458.1\| putative stress-response protein [Salmonella enterica subsp. enteric... YJBJ_SALTI - UPF0337 protein yjbJ OS=Salmonella typhi GN=yjbJ PE=3 SV=1 gi\|224586005, gi... - gi\|224586005\|ref\|YP_002639804.1\| hypothetical protein SPC_4301 [Salmonella enterica subsp. enterica ... YJBJ_SALTY - UPF0337 protein yjbJ OS=Salmonella typhimurium GN=yjbJ PE=3 SV=1 gi\|213424508 - gi\|213424508\|ref\|ZP_03357305.1\| putative stress-response protein [Salmonella enterica subsp. enteric... gi\|213582874 - gi\|213582874\|ref\|ZP_03364700.1\| putative stress-response protein [Salmonella enterica subsp. enteric... gi\|213622308 - gi\|213622308\|ref\|ZP_03375091.1\| putative stress-response protein [Salmonella enterica subsp. enteric... gi\|213647513 - gi\|213647513\|ref\|ZP_03377566.1\| putative stress-response protein [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=yjbJ] [protein=putative stress-response protein] [protein_id=YP_005240532.1] [location=4475031...	89.0	[0..4]	[73..1]
gi\|150376861, gi... - gi\|150376861\|ref\|YP_001313457.1\| CsbD family protein [Sinorhizobium medicae WSM419], gi\|150031408\|gb...	88.0	[0..5]	[73..1]
gi\|227886949, gi... - gi\|227886949\|ref\|ZP_04004754.1\| CsbD family protein [Escherichia coli 83972], gi\|227836090\|gb\|EEJ465... gi\|190907750, gi... - gi\|75241075\|ref\|ZP_00724949.1\| COG3237: Uncharacterized protein conserved in bacteria [Escherichia c... YJBJ_ECOL6 - UPF0337 protein YjbJ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yjbJ PE=3 SV=... YJBJ_ECOL6 - UPF0337 protein yjbJ OS=Escherichia coli O6 GN=yjbJ PE=3 SV=2 gi\|218367884, gi... - gi\|218561115\|ref\|YP_002394028.1\| putative stress-response protein [Escherichia coli S88], gi\|2183678... gi\|218429894, gi... - gi\|218692330\|ref\|YP_002400542.1\| putative stress-response protein [Escherichia coli ED1a], gi\|218429... gi\|170682102, gi... - gi\|170682102\|ref\|YP_001746435.1\| CsbD family protein [Escherichia coli SMS-3-5], gi\|170519820\|gb\|ACB... gi\|215489383, gi... - gi\|215489383\|ref\|YP_002331814.1\| putative stress-response protein [Escherichia coli O127:H6 str. E23... gi\|110345974, gi... - gi\|110644382\|ref\|YP_672112.1\| putative stress-response protein [Escherichia coli 536], gi\|110345974\|... gi\|218372696, gi... - gi\|218702710\|ref\|YP_002410339.1\| putative stress-response protein [Escherichia coli IAI39], gi\|21837...	88.0	[0..5]	[73..1]
gi\|75514806, gi\|... - gi\|75514806\|ref\|ZP_00737035.1\| COG3237: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|74314539, gi\|... - gi\|74314539\|ref\|YP_312958.1\| putative stress-response protein [Shigella sonnei Ss046], gi\|73858016\|g... gi\|254796047, gi... - gi\|254796047\|ref\|YP_003080884.1\| predicted stress response protein [Escherichia coli O157:H7 str. TW... gi\|193067817, gi... - gi\|75238583\|ref\|ZP_00722572.1\| COG3237: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|254163981, gi... - gi\|254163981\|ref\|YP_003047089.1\| predicted stress response protein [Escherichia coli B str. REL606],... gi\|75258965, gi\|... - gi\|75258965\|ref\|ZP_00730333.1\| COG3237: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|253775327, gi... - gi\|254290731\|ref\|YP_003056479.1\| predicted stress response protein [Escherichia coli BL21(DE3)], gi\|... gi\|89110766, gi\|... - gi\|89110766\|ref\|AP_004546.1\| predicted stress response protein [Escherichia coli str. K-12 substr. W... gi\|251787301, gi... - gi\|251787301\|ref\|YP_003001605.1\| hypothetical protein B21_03877 [Escherichia coli BL21], gi\|24237957... gi\|56384079, gi\|... - gi\|56480528\|ref\|NP_709875.2\| putative stress-response protein [Shigella flexneri 2a str. 301], gi\|56... gi\|238903154, gi... - gi\|238903154\|ref\|YP_002928950.1\| putative stress response protein [Escherichia coli BW2952], gi\|2388... gi\|81243693, gi\|... - gi\|82779545\|ref\|YP_405894.1\| putative stress-response protein [Shigella dysenteriae Sd197], gi\|81243... gi\|81247797, gi\|... - gi\|82546386\|ref\|YP_410333.1\| putative stress-response protein [Shigella boydii Sb227], gi\|81247797\|g... gi\|194437284, gi... - gi\|83587138\|ref\|ZP_00925767.1\| COG3237: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|187730040, gi... - gi\|75179594\|ref\|ZP_00699598.1\| COG3237: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|194415116, gi... - gi\|75211928\|ref\|ZP_00711983.1\| COG3237: Uncharacterized protein conserved in bacteria [Escherichia c... EG11928 - stress-induced protein, UPF0337 family / Stress-induced protein, UPF0337 family, function unknown gi\|75229388, gi\|... - gi\|75229388\|ref\|ZP_00715940.1\| COG3237: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|15834282, gi\|... - gi\|15834282\|ref\|NP_313055.1\| putative stress-response protein [Escherichia coli O157:H7 str. Sakai],... gi\|75188771, gi\|... - gi\|75188771\|ref\|ZP_00702038.1\| COG3237: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|110807938, gi... - gi\|110807938\|ref\|YP_691458.1\| putative stress-response protein [Shigella flexneri 5 str. 8401], gi\|1... gi\|157163514, gi... - gi\|75197905\|ref\|ZP_00707975.1\| COG3237: Uncharacterized protein conserved in bacteria [Escherichia c... YJBJ_SHIFL - UPF0337 protein YjbJ OS=Shigella flexneri GN=yjbJ PE=3 SV=1 gi\|30042894, gi\|... - gi\|30064635\|ref\|NP_838806.1\| putative stress-response protein [Shigella flexneri 2a str. 2457T], gi\|... YJBJ_ECO57 - UPF0337 protein YjbJ OS=Escherichia coli O157:H7 GN=yjbJ PE=3 SV=1 EG11928 - stress-induced protein, UPF0337 family / Stress-induced protein, UPF0337 family, function unknown gi\|15804638, gi\|... - gi\|15804638\|ref\|NP_290679.1\| putative stress-response protein [Escherichia coli O157:H7 EDL933], gi\|... YJBJ_ECOLI - UPF0337 protein yjbJ - Escherichia coli gi\|124501128, gi... - gi\|124527685\|ref\|ZP_01699120.1\| CsbD family protein [Escherichia coli B], gi\|124501128\|gb\|EAY48594.1... gi\|218697753, gi... - gi\|218697753\|ref\|YP_002405420.1\| putative stress-response protein [Escherichia coli 55989], gi\|21835... gi\|218707667, gi... - gi\|218707667\|ref\|YP_002415186.1\| putative stress-response protein [Escherichia coli UMN026], gi\|2184... gi\|188015031, gi... - gi\|188015031\|gb\|EDU53153.1\| CsbD family protein [Escherichia coli O157:H7 str. EC4113], gi\|168750822... gi\|168755197, gi... - gi\|189357506\|gb\|EDU75925.1\| CsbD family protein [Escherichia coli O157:H7 str. EC4401], gi\|168755197... gi\|194432318, gi... - gi\|194432318\|ref\|ZP_03064606.1\| CsbD family protein [Shigella dysenteriae 1012], gi\|194419521\|gb\|EDX... gi\|195935812 - gi\|195935812\|ref\|ZP_03081194.1\| putative stress-response protein [Escherichia coli O157:H7 str. EC40... gi\|208727187, gi... - gi\|208807386\|ref\|ZP_03249723.1\| CsbD family protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|208814255, gi... - gi\|208814255\|ref\|ZP_03255584.1\| CsbD family protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208739866, gi... - gi\|208819743\|ref\|ZP_03260063.1\| CsbD family protein [Escherichia coli O157:H7 str. EC4042], gi\|20873... gi\|209159411, gi... - gi\|209398011\|ref\|YP_002273566.1\| CsbD family protein [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|217320386, gi... - gi\|217324165\|ref\|ZP_03440249.1\| CsbD family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|218556602, gi... - gi\|218556602\|ref\|YP_002389516.1\| putative stress-response protein [Escherichia coli IAI1], gi\|218363... gi\|168760892, gi... - gi\|189368525\|gb\|EDU86941.1\| CsbD family protein [Escherichia coli O157:H7 str. EC4501], gi\|168760892... gi\|189363976, gi... - gi\|189363976\|gb\|EDU82395.1\| CsbD family protein [Escherichia coli O157:H7 str. EC4486], gi\|168766287... gi\|187769829, gi... - gi\|187769829\|gb\|EDU33673.1\| CsbD family protein [Escherichia coli O157:H7 str. EC4196], gi\|168774384... gi\|168780439, gi... - gi\|189001627\|gb\|EDU70613.1\| CsbD family protein [Escherichia coli O157:H7 str. EC4076], gi\|168780439... gi\|168784642, gi... - gi\|189375071\|gb\|EDU93487.1\| CsbD family protein [Escherichia coli O157:H7 str. EC869], gi\|168784642\|... gi\|189379153, gi... - gi\|189379153\|gb\|EDU97569.1\| CsbD family protein [Escherichia coli O157:H7 str. EC508], gi\|168798310\|... gi\|170021957, gi... - gi\|170021957\|ref\|YP_001726911.1\| putative stress-response protein [Escherichia coli ATCC 8739], gi\|1... gi\|170083502, gi... - gi\|170083502\|ref\|YP_001732822.1\| stress response protein [Escherichia coli str. K-12 substr. DH10B],...	87.0	[0..5]	[73..1]
RPA4217 - RPA4217 conserved unknown protein 4761873:4762073 forward MW:7991 gi\|192293059, gi... - gi\|192293059\|ref\|YP_001993664.1\| CsbD family protein [Rhodopseudomonas palustris TIE-1], gi\|19228680... Y4217_RHOPA - UPF0337 protein RPA4217 OS=Rhodopseudomonas palustris GN=RPA4217 PE=3 SV=1	86.0	[0..5]	[67..1]
gi\|115519845, gi... - gi\|115525898\|ref\|YP_782809.1\| CsbD family protein [Rhodopseudomonas palustris BisA53], gi\|115519845\|...	86.0	[0..1]	[65..21]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEILMNKDQA SGNWKQFKGK AKEQWGKLTD DDLTVIEGKR DQLVGRIQER YGYEKEAAEK  60
   61 EVKHWEDHHK YHW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1rykA
Description:	NMR structure of the hypothetical protein encoded by the YjbJ gene from Escherichia coli. Ontario Centre for Structural Proteomics target EC0298_1_69; Northeast Structural Genomics Target ET93
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits