YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50119394, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50119394, gi|....

Description	E-value	Query Range	Subject Range
Q663E5\|Q663E5_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|51591648, gi\|... - gi\|51593951\|ref\|YP_068517.1\| hypothetical protein pYptb0009 [Yersinia pseudotuberculosis IP 32953], ...	136.0	[0..1]	[84..1]
gi\|46143499 - gi\|46143499\|ref\|ZP_00204490.1\| COG4115: Uncharacterized protein conserved in bacteria [Actinobacillu...	135.0	[0..1]	[84..1]
gi\|238901207, gi... - gi\|238901207\|ref\|YP_002927003.1\| toxin of the YoeB-YefM toxin-antitoxin system [Escherichia coli BW2... gi\|226237424 - gi\|226237424\|dbj\|BAH46946.1\| toxin of the YoeB-YefM toxin-antitoxin system [Escherichia coli O55:H7] gi\|187427698, gi... - gi\|75177144\|ref\|ZP_00697242.1\| COG4115: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|74312559, gi\|... - gi\|74312559\|ref\|YP_310978.1\| hypothetical protein SSON_2087 [Shigella sonnei Ss046], gi\|73856036\|gb\|... gi\|89108837, gi\|... - gi\|89108837\|ref\|AP_002617.1\| toxin of the YoeB-YefM toxin-antitoxin system [Escherichia coli str. K-... YOEB_ECOLI - Toxin yoeB - Escherichia coli gi\|194425014, gi... - gi\|194436286\|ref\|ZP_03068388.1\| addiction module toxin component YoeB [Escherichia coli 101-1], gi\|1... gi\|194428775, gi... - gi\|194428775\|ref\|ZP_03061311.1\| addiction module toxin component YoeB [Escherichia coli B171], gi\|19... gi\|215265310, gi... - gi\|215487238\|ref\|YP_002329669.1\| toxin of the YoeB-YefM toxin-antitoxin system [Escherichia coli O12... gi\|209919481, gi... - gi\|209919481\|ref\|YP_002293565.1\| hypothetical protein ECSE_2290 [Escherichia coli SE11], gi\|20991274... gi\|218554579, gi... - gi\|218554579\|ref\|YP_002387492.1\| toxin of the YoeB-YefM toxin-antitoxin system [Escherichia coli IAI... gi\|218549430, gi... - gi\|218549430\|ref\|YP_002383221.1\| toxin of the YoeB-YefM toxin-antitoxin system [Escherichia ferguson... gi\|110805989, gi... - gi\|110805989\|ref\|YP_689509.1\| hypothetical protein SFV_2076 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|218352374, gi... - gi\|218695642\|ref\|YP_002403309.1\| toxin of the YoeB-YefM toxin-antitoxin system [Escherichia coli 559... gi\|218365667, gi... - gi\|218558898\|ref\|YP_002391811.1\| toxin of the YoeB-YefM toxin-antitoxin system [Escherichia coli S88... EG14356 - toxin of the YoeB-YefM toxin-antitoxin system / Toxin in the YefM-YoeB toxin /antitoxin pair; has in ... gi\|170081647, gi... - gi\|170081647\|ref\|YP_001730967.1\| toxin of the YoeB-YefM toxin-antitoxin system [Escherichia coli str... gi\|190902220, gi... - gi\|191167707\|ref\|ZP_03029515.1\| addiction module toxin component YoeB [Escherichia coli B7A], gi\|190... gi\|188496052, gi... - gi\|188496052\|ref\|ZP_03003322.1\| toxin YoeB [Escherichia coli 53638], gi\|188491251\|gb\|EDU66354.1\| tox... gi\|193071566, gi... - gi\|193071566\|ref\|ZP_03052474.1\| addiction module toxin component YoeB [Escherichia coli E110019], gi... EG14356 - toxin of the YoeB-YefM toxin-antitoxin system / Toxin in the YefM-YoeB toxin /antitoxin pair; has in ... gi\|192931538, gi... - gi\|193062895\|ref\|ZP_03043988.1\| addiction module toxin component YoeB [Escherichia coli E22], gi\|192... gi\|24113399, gi\|... - gi\|24113399\|ref\|NP_707909.1\| hypothetical protein SF2076 [Shigella flexneri 2a str. 301], gi\|2405241... YOEB_SHIFL - Toxin YoeB OS=Shigella flexneri GN=yoeB PE=3 SV=1 gi\|157154770, gi... - gi\|157154770\|ref\|YP_001463368.1\| toxin YoeB [Escherichia coli E24377A], gi\|157076800\|gb\|ABV16508.1\| ... gi\|227887066, gi... - gi\|227887066\|ref\|ZP_04004871.1\| toxin-antitoxin system toxin protein Txe [Escherichia coli 83972], g...	133.0	[0..1]	[84..1]
gi\|28806812 - gi\|28806812\|dbj\|BAC60083.1\| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28898594, gi\|... - gi\|28898594\|ref\|NP_798199.1\| hypothetical protein VP1820 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|37198723, gi\|... - gi\|37679977\|ref\|NP_934586.1\| hypothetical protein VV1793 [Vibrio vulnificus YJ016], gi\|37198723\|dbj\|...	132.0	[0..3]	[84..9]
YOEB_STRCO - Toxin YoeB OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=yoeB PE=3 SV=1 YOEB_STRCO - Toxin YoeB OS=Streptomyces coelicolor GN=yoeB PE=3 SV=1	132.0	[0..1]	[84..1]
YOEB_ECOL6 - Toxin YoeB OS=Escherichia coli O6 GN=yoeB PE=3 SV=1 gi\|91072877, gi\|... - gi\|91211303\|ref\|YP_541289.1\| hypothetical protein UTI89_C2290 [Escherichia coli UTI89], gi\|91072877\|... gi\|110642230, gi... - gi\|110642230\|ref\|YP_669960.1\| hypothetical protein ECP_2060 [Escherichia coli 536], gi\|110343822\|gb\|... YOEB_ECOL6 - Toxin YoeB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yoeB PE=3 SV=1 gi\|190909505, gi... - gi\|191169989\|ref\|ZP_03031543.1\| addiction module toxin component YoeB [Escherichia coli F11], gi\|190...	131.0	[0..1]	[84..1]
gi\|56313359, gi\|... - gi\|56477316\|ref\|YP_158905.1\| hypothetical protein ebB103 [Aromatoleum aromaticum EbN1], gi\|56313359\|...	130.0	[0..1]	[84..1]
gi\|77384859, gi\|... - gi\|77460856\|ref\|YP_350363.1\| addiction module toxin, Txe/YoeB [Pseudomonas fluorescens Pf0-1], gi\|77...	130.0	[0..1]	[84..1]
gi\|117624220, gi... - gi\|117624220\|ref\|YP_853133.1\| hypothetical protein APECO1_1114 [Escherichia coli APEC O1], gi\|115513... gi\|237704474, gi... - gi\|237704474\|ref\|ZP_04534955.1\| toxin YoeB [Escherichia sp. 3_2_53FAA], gi\|226900840\|gb\|EEH87099.1\| ...	130.0	[0..1]	[84..1]
gi\|15077436 - gi\|15077436\|gb\|AAK83163.1\|AF333038_3 AviX3 [Streptomyces viridochromogenes]	129.0	[0..1]	[84..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIWSEEAW EDYLYWQDID KRTVKKINEL IKETRRTPFE GKGKPEPLKH NLAGFWSRRI  60
   61 TEAHRLVYAI TDDAMMIAAC RYHY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	2a6qE
Description:	Crystal structure of YefM-YoeB complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits