YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50119333, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50119333, gi|....

Description	E-value	Query Range	Subject Range
NRDG_VIBCH - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Vibrio cholerae serotype O1 (s... gi\|153825853, gi... - gi\|153825853\|ref\|ZP_01978520.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|254845380, gi... - gi\|75830585\|ref\|ZP_00759860.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae MO10], g... gi\|116216435, gi... - gi\|75823225\|ref\|ZP_00752743.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae RC385], ... gi\|121726072, gi... - gi\|75816710\|ref\|ZP_00747172.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae V52], gi... gi\|121549301, gi... - gi\|121586476\|ref\|ZP_01676263.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|153220897, gi... - gi\|153220897\|ref\|ZP_01951979.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|227011224, gi... - gi\|227812082\|ref\|YP_002812092.1\| anaerobic ribonucleoside-triphosphate reductase activating protein ... NRDG_VIBCH - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Vibrio cholerae GN=nrdG PE=3 S... gi\|153819577, gi... - gi\|153819577\|ref\|ZP_01972244.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|229356667, gi... - gi\|229506316\|ref\|ZP_04395825.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229509564, gi... - gi\|229509564\|ref\|ZP_04399046.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229346496, gi... - gi\|229516615\|ref\|ZP_04406062.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229523014, gi... - gi\|229523014\|ref\|ZP_04412426.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229605867, gi... - gi\|229605867\|ref\|YP_002876571.1\| ribonucleotide reductase of class III (anaerobic) activating protei...	140.0	[0..1]	[153..1]
gi\|157163711, gi... - gi\|75198088\|ref\|ZP_00708158.1\| COG0602: Organic radical activating enzymes [Escherichia coli HS], gi... gi\|30065476, gi\|... - gi\|30065476\|ref\|NP_839647.1\| anaerobic ribonucleotide reductase-activating protein [Shigella flexner... gi\|110808021, gi... - gi\|110808021\|ref\|YP_691541.1\| anaerobic ribonucleotide reductase-activating protein [Shigella flexne... gi\|218697987, gi... - gi\|218697987\|ref\|YP_002405654.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia ... gi\|218434943, gi... - gi\|218707846\|ref\|YP_002415365.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia ... gi\|74314714, gi\|... - gi\|74314714\|ref\|YP_313133.1\| anaerobic ribonucleotide reductase-activating protein [Shigella sonnei ... gi\|24115454, gi\|... - gi\|24115454\|ref\|NP_709964.1\| anaerobic ribonucleotide reductase-activating protein [Shigella flexner...	140.0	[0..1]	[154..1]
gi\|227015435, gi... - gi\|75825338\|ref\|ZP_00754774.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae O395], g...	140.0	[0..1]	[153..1]
gi\|78509911, gi\|... - gi\|78690684\|ref\|ZP_00855325.1\| Radical-activating enzyme [Shewanella sp. MR-7], gi\|78509911\|gb\|EAP23...	140.0	[0..1]	[153..1]
gi\|116220532, gi... - gi\|75819831\|ref\|ZP_00749895.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae V51], gi...	139.0	[0..1]	[153..1]
gi\|205274967, gi... - gi\|205355186\|ref\|YP_002228987.1\| anaerobic ribonucleotide reductase-activating protein [Salmonella e... gi\|207859578, gi... - gi\|207859578\|ref\|YP_002246229.1\| anaerobic ribonucleotide reductase-activating protein [Salmonella e... NRDG_SALTY - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Salmonella typhimurium GN=nrdG... NRDG_SALTY - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Salmonella typhimurium GN=nrdG... gi\|205330313, gi... - gi\|205330313\|gb\|EDZ17077.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Salm... gi\|238910607 - gi\|238910607\|ref\|ZP_04654444.1\| anaerobic ribonucleotide reductase-activating protein [Salmonella en... NRDG_SALTY - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Salmonella typhimurium (strain... lcl\|NC_016856.1_... - [gene=nrdG] [protein=anaerobic ribonucleotide reductase-activating protein] [protein_id=YP_005240772...	138.0	[0..1]	[154..1]
gi\|26251143, gi\|... - gi\|26251143\|ref\|NP_757183.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia coli...	138.0	[0..1]	[154..1]
gi\|89110955, gi\|... - gi\|89110955\|ref\|AP_004735.1\| anaerobic ribonucleotide reductase activating protein [Escherichia coli... gi\|75242375, gi\|... - gi\|75242375\|ref\|ZP_00726137.1\| COG0602: Organic radical activating enzymes [Escherichia coli F11], g... gi\|82779299, gi\|... - gi\|82779299\|ref\|YP_405648.1\| anaerobic ribonucleotide reductase-activating protein [Shigella dysente... gi\|81247927, gi\|... - gi\|82546516\|ref\|YP_410463.1\| anaerobic ribonucleotide reductase-activating protein [Shigella boydii ... gi\|91075364, gi\|... - gi\|91213790\|ref\|YP_543776.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia coli... gi\|13364691, gi\|... - gi\|15834468\|ref\|NP_313241.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia coli... gi\|110644598, gi... - gi\|110644598\|ref\|YP_672328.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia col... gi\|170083678, gi... - gi\|170083678\|ref\|YP_001732998.1\| anaerobic ribonucleotide reductase activating protein [Escherichia ... gi\|189379520, gi... - gi\|189379520\|gb\|EDU97936.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Esch... NRDG_ECO57 - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Escherichia coli O157:H7 GN=nr... gi\|195937262 - gi\|195937262\|ref\|ZP_03082644.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia c... EG12523 - anaerobic ribonucleotide reductase activating protein / Ribonucleotide reductase activase, generatin... gi\|187427646, gi... - gi\|187730654\|ref\|YP_001882979.1\| anaerobic ribonucleoside-triphosphate reductase activating protein ... gi\|12519241, gi\|... - gi\|15804827\|ref\|NP_290868.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia coli... gi\|208813087, gi... - gi\|208813087\|ref\|ZP_03254416.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|208806974, gi... - gi\|208806974\|ref\|ZP_03249311.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|209158664, gi... - gi\|209397264\|ref\|YP_002273779.1\| anaerobic ribonucleoside-triphosphate reductase activating protein ... gi\|208821703, gi... - gi\|208821703\|ref\|ZP_03262023.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|188014838, gi... - gi\|188014838\|gb\|EDU52960.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Esch... gi\|117626583, gi... - gi\|117626583\|ref\|YP_859906.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia col... gi\|168760487, gi... - gi\|189368958\|gb\|EDU87374.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Esch... gi\|189357806, gi... - gi\|189357806\|gb\|EDU76225.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Esch... gi\|187770225, gi... - gi\|187770225\|gb\|EDU34069.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Esch... gi\|189363967, gi... - gi\|189363967\|gb\|EDU82386.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Esch... gi\|189375090, gi... - gi\|189375090\|gb\|EDU93506.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Esch... gi\|188999746, gi... - gi\|188999746\|gb\|EDU68732.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Esch... gi\|237703912, gi... - gi\|237703912\|ref\|ZP_04534393.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia s... gi\|238903340, gi... - gi\|238903340\|ref\|YP_002929136.1\| anaerobic ribonucleotide reductase activating protein [Escherichia ... gi\|254796256, gi... - gi\|254796256\|ref\|YP_003081093.1\| anaerobic ribonucleotide reductase activating protein [Escherichia ... EG12523 - anaerobic ribonucleotide reductase activating protein / Ribonucleotide reductase activase, generatin... NRDG_ECOLI - Anaerobic ribonucleoside-triphosphate reductase-activating protein (EC 1.97.1.-) (Class III anaerobi... gi\|218692625, gi... - gi\|218692625\|ref\|YP_002400837.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia ... gi\|217325139, gi... - gi\|217325139\|ref\|ZP_03441223.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|218702941, gi... - gi\|218702941\|ref\|YP_002410570.1\| anaerobic ribonucleotide reductase-activating protein [Escherichia ...	138.0	[0..1]	[154..1]
gi\|7331272 - gi\|7331272\|gb\|AAF60352.1\|AF242390_2 anaerobic ribonucleoside-triphosphate reductase activating prote... gi\|7331272\|gb\|AA... - anaerobic ribonucleoside-triphosphate reductase activating protein [Salmonella typhimurium]	138.0	[0..1]	[154..1]
gi\|170718687, gi... - gi\|46156862\|ref\|ZP_00131875.2\| COG0602: Organic radical activating enzymes [Haemophilus somnus 2336]...	137.0	[0..1]	[154..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYHQYYPVD VVNGPGTRCS LFVAGCVHEC VGCYNKSTWR LNSGQPFTQE QEDRIIADLQ  60
   61 DKLIPRQGIS LSGGDPLHPQ NVPDILRLVE RIRAECPGKD IWVWTGYVLA DITREQQRVV 120
  121 DLINVLVDGK FVQDLKDPAL IWRGSSNQVV HRLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	1r30A
Description:	The Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits