YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49609852, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49609852, gi|....

Description	E-value	Query Range	Subject Range
gi\|82545338, gi\|... - gi\|82545338\|ref\|YP_409285.1\| hypothetical protein SBO_2943 [Shigella boydii Sb227], gi\|81246749\|gb\|A...	165.0	[0..3]	[138..4]
gi\|194439820, gi... - gi\|83584805\|ref\|ZP_00923466.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc... EG12724 - antitoxinof the HigB-HigA toxin-antitoxin system / Antitoxin for HigB toxin HIGA_ECOL6, YGJM... - Uncharacterized HTH-type transcriptional regulator ygjM OS=Escherichia coli O6 GN=ygjM PE=4 SV=1, An... gi\|227887807, gi... - gi\|227887807\|ref\|ZP_04005612.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli 83972]... gi\|238862290, gi... - gi\|238902192\|ref\|YP_002927988.1\| putative DNA-binding transcriptional regulator [Escherichia coli BW... gi\|242378630, gi... - gi\|251786357\|ref\|YP_003000661.1\| hypothetical protein B21_02901 [Escherichia coli BL21], gi\|24237863... gi\|110616512, gi... - gi\|110806964\|ref\|YP_690484.1\| hypothetical protein SFV_3123 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|253979085, gi... - gi\|254289778\|ref\|YP_003055526.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|254038252, gi... - gi\|254038252\|ref\|ZP_04872310.1\| helix-turn-helix DNA-binding domain-containing protein [Escherichia ... gi\|253974929, gi... - gi\|254163028\|ref\|YP_003046136.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|124526008, gi... - gi\|124526008\|ref\|ZP_01698013.1\| helix-turn-helix domain protein [Escherichia coli B], gi\|124502112\|g... gi\|170082624, gi... - gi\|170082624\|ref\|YP_001731944.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 s... gi\|170018667, gi... - gi\|170018667\|ref\|YP_001723621.1\| helix-turn-helix domain-containing protein [Escherichia coli ATCC 8... HIGA_SHIFL - Antitoxin HigA OS=Shigella flexneri GN=higA PE=3 SV=1 gi\|30042684, gi\|... - gi\|30064425\|ref\|NP_838596.1\| hypothetical protein S3329 [Shigella flexneri 2a str. 2457T], gi\|300426... YGJM_ECOLI - Putative HTH-type transcriptional regulator ygjM - Escherichia coli EG12724 - antitoxinof the HigB-HigA toxin-antitoxin system / Antitoxin for HigB toxin gi\|24053546, gi\|... - gi\|24114377\|ref\|NP_708887.1\| hypothetical protein SF3122 [Shigella flexneri 2a str. 301], gi\|2405354... HIGA_ECOL6 - Antitoxin HigA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=higA PE=3 SV=1 gi\|157156464, gi... - gi\|75187891\|ref\|ZP_00701158.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc... gi\|209920554, gi... - gi\|209920554\|ref\|YP_002294638.1\| hypothetical protein ECSE_3363 [Escherichia coli SE11], gi\|20991381... gi\|75230001, gi\|... - gi\|75230001\|ref\|ZP_00716514.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc... gi\|194431803, gi... - gi\|194431803\|ref\|ZP_03064094.1\| helix-turn-helix DNA-binding domain protein [Shigella dysenteriae 10... gi\|193067271, gi... - gi\|75239348\|ref\|ZP_00723319.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc... gi\|218696786, gi... - gi\|218696786\|ref\|YP_002404453.1\| putative DNA-binding transcriptional regulator [Escherichia coli 55... gi\|191172217, gi... - gi\|75240886\|ref\|ZP_00724784.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc... gi\|218428950, gi... - gi\|218691386\|ref\|YP_002399598.1\| putative DNA-binding transcriptional regulator [Escherichia coli ED... gi\|188486967, gi... - gi\|75513296\|ref\|ZP_00735720.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc... gi\|89109851, gi\|... - gi\|89109851\|ref\|AP_003631.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ...	164.0	[0..3]	[138..4]
gi\|193062115, gi... - gi\|75260014\|ref\|ZP_00731292.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc... gi\|194427722, gi... - gi\|75211035\|ref\|ZP_00711148.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc... gi\|218433803, gi... - gi\|218706706\|ref\|YP_002414225.1\| putative DNA-binding transcriptional regulator [Escherichia coli UM...	164.0	[0..3]	[138..4]
gi\|74313524, gi\|... - gi\|74313524\|ref\|YP_311943.1\| hypothetical protein SSON_3123 [Shigella sonnei Ss046], gi\|73857001\|gb\|... gi\|187427631, gi... - gi\|75176058\|ref\|ZP_00696226.1\| COG5499: Predicted transcription regulator containing HTH domain [Shi...	164.0	[0..3]	[138..4]
gi\|110344918, gi... - gi\|110643326\|ref\|YP_671056.1\| hypothetical protein ECP_3173 [Escherichia coli 536], gi\|110344918\|gb\|...	164.0	[0..3]	[138..4]
gi\|157162558, gi... - gi\|75197035\|ref\|ZP_00707105.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc...	161.0	[0..3]	[138..4]
gi\|208738907, gi... - gi\|208818784\|ref\|ZP_03259104.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H... gi\|209398621, gi... - gi\|209398621\|ref\|YP_002272555.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:... gi\|217327226, gi... - gi\|217327226\|ref\|ZP_03443309.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H... gi\|189379678, gi... - gi\|189379678\|gb\|EDU98094.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|195937228 - gi\|195937228\|ref\|ZP_03082610.1\| hypothetical protein EscherichcoliO157_12366 [Escherichia coli O157:... gi\|208728042, gi... - gi\|208808241\|ref\|ZP_03250578.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H... gi\|208733184, gi... - gi\|208811907\|ref\|ZP_03253236.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H... gi\|168769494, gi... - gi\|189361437\|gb\|EDU79856.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|187770803, gi... - gi\|187770803\|gb\|EDU34647.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|189001136, gi... - gi\|189001136\|gb\|EDU70122.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|189374071, gi... - gi\|189374071\|gb\|EDU92487.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|188016323, gi... - gi\|188016323\|gb\|EDU54445.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|189358676, gi... - gi\|189358676\|gb\|EDU77095.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|168762039, gi... - gi\|189367610\|gb\|EDU86026.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|13363437, gi\|... - gi\|15833218\|ref\|NP_311991.1\| hypothetical protein ECs3964 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254795033, gi... - gi\|254795033\|ref\|YP_003079870.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... gi\|13363437, gi\|... - gi\|15833218\|ref\|NP_311991.1\| hypothetical protein ECs3964 [Escherichia coli O157:H7], gi\|13363437\|db... gi\|209759110, gi... - pir\|\|C85969 hypothetical protein ygjM [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15803623, gi\|... - gi\|15803623\|ref\|NP_289656.1\| hypothetical protein Z4435 [Escherichia coli O157:H7 EDL933], gi\|125176...	160.0	[0..3]	[138..4]
gi\|82778408, gi\|... - gi\|82778408\|ref\|YP_404757.1\| hypothetical protein SDY_3266 [Shigella dysenteriae Sd197], gi\|81242556...	159.0	[0..3]	[138..4]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMYADAIKAA NDLTSIVPFL GGSTSRKDYE DALKLTEYLI ESEPDSSLID MLTAKIDKYE  60
   61 NEAPEFAAFN ERIKALPAGI ALLRVLMDQH QLMQSDFEAE IGKKSLVSRI LNGERTLTLA 120
  121 HMRALAKRFN IPVSAFVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.154902
Match:	2ebyA
Description:	No description for 2ebyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits