YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49609794, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49609794, gi|....

Description	E-value	Query Range	Subject Range
gi\|2052029, gi\|7... - pir\|\|T07156 probable glutathione transferase (EC 2.5.1.18) - soybean, gi\|2052029\|emb\|CAA71784.1\| glu...	182.0	[0..7]	[209..1]
gi\|17385642 - gi\|17385642\|dbj\|BAB32446.2\| glutathione S-transferase [Matricaria chamomilla]	178.0	[0..11]	[209..6]
gi\|8052535 - gi\|8052535\|gb\|AAF71799.1\|AC013430_8 F3F9.13 [Arabidopsis thaliana]	173.0	[0..7]	[212..1]
gi\|2853219, gi\|7... - pir\|\|T09781 glutathione transferase (EC 2.5.1.18) - papaya, gi\|2853219\|emb\|CAA04391.1\| glutathione t...	168.0	[0..7]	[209..1]
gi\|110749703 - gi\|110749703\|gb\|ABG90381.1\| glutathione S-transferase [Caragana korshinskii]	168.0	[0..7]	[209..1]
gi\|16504406, gi\|... - gi\|25301490\|pir\|\|AE0908 stringent starvation protein A [imported] - Salmonella enterica subsp. enter... gi\|213647311 - gi\|213647311\|ref\|ZP_03377364.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ... gi\|214002727 - gi\|214002727\|ref\|ZP_03413462.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ... gi\|29143592, gi\|... - gi\|29143592\|ref\|NP_806934.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ser... gi\|16762103 - gi\|16762103\|ref\|NP_457720.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ser... gi\|213424385 - gi\|213424385\|ref\|ZP_03357208.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ... gi\|213583253 - gi\|213583253\|ref\|ZP_03365079.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ...	168.0	[0..1]	[209..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAANKRSV MTLFSGQSDI FSHQVRIVLA EKGVSVEIEL VDMDNLPQDL IDLNPYGSVP  60
   61 TLVDRELTLY ESRIIMEYLD ERFPHPPLMP VYPVARGNSR LMMHRIESDW YSLLRKMTHG 120
  121 NAQEADAARK QLREELLAIA PVFNETPYFM SEEFSLVDCY LAPLLWRLPQ LGIELSGSGA 180
  181 KELKGYMTRV FERDAFLASL TEVEREMRLQ TRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.30103
Match:	1yy7A
Description:	Crystal structure of stringent starvation protein A (SspA), an RNA polymerase-associated transcription factor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits